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Revision as of 03:40, 15 December 2015

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*I tested the new .gdb file with the unmodified data ID's and found that every ID still resulted in an error.\

*I tested the new .gdb file with the unmodified data ID's and found that every ID still resulted in an error.\

*To figure out my problem I opened the .gdb file with Microsoft Access and looked in the ordered Locus names to see that there was a copy of each gene ID (Which was expected), but also that the copy of the ID names had two underscores in them instead of none.

*To figure out my problem I opened the .gdb file with Microsoft Access and looked in the ordered Locus names to see that there was a copy of each gene ID (Which was expected), but also that the copy of the ID names had two underscores in them instead of none.

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*I redid the code by adding this line:

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 	                	newId = "SO" + substrings[i].substring(3,substrings[i].length()); 

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*Then I re-exported the gene database. The links can be foound on our gene database testing report page.

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**Uniprot took 3.13 minutes.

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**OBO.XML took 7.05 minutes.

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**Processing the GO terms took 4.76 minutes.

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**GOA took .06 minutes.

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**The export took 1 hour and 35 minutes. 

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*The new .gdb file can be located on the files and deliverables page.

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Malverso Week 15 - Revision history

Malverso: updated electronic journal