<?xml version="1.0"?>
<feed xmlns="http://www.w3.org/2005/Atom" xml:lang="en">
		<id>https://xmlpipedb.lmucs.io/biodb/fall2015/index.php?action=history&amp;feed=atom&amp;title=Week_2</id>
		<title>Week 2 - Revision history</title>
		<link rel="self" type="application/atom+xml" href="https://xmlpipedb.lmucs.io/biodb/fall2015/index.php?action=history&amp;feed=atom&amp;title=Week_2"/>
		<link rel="alternate" type="text/html" href="https://xmlpipedb.lmucs.io/biodb/fall2015/index.php?title=Week_2&amp;action=history"/>
		<updated>2026-05-04T22:34:39Z</updated>
		<subtitle>Revision history for this page on the wiki</subtitle>
		<generator>MediaWiki 1.25.1</generator>

<tr><td colspan="2" class="diff-lineno" id="L1" ><!--LINE 1--></td>
<td colspan="2" class="diff-lineno"><!--LINE 1--></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div><del class="diffchange diffchange-inline">= Team Information &amp; Links =</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class="diffchange diffchange-inline">&#039;&#039;&#039;This journal entry is due on Tuesday, September 15, at midnight PDT.&#039;&#039;&#039; &#039;&#039;(Monday night/Tuesday morning)&#039;&#039;</ins></div></td></tr>
<tr><td class='diff-marker'>&#160;</td><td class='diff-context'></td><td class='diff-marker'>&#160;</td><td class='diff-context'></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div>{{<del class="diffchange diffchange-inline">Template:Class Whoopers</del>}}</div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class="diffchange diffchange-inline">&lt;!--</ins>{{ <ins class="diffchange diffchange-inline">Under Construction </ins>}}<ins class="diffchange diffchange-inline">--&gt;</ins></div></td></tr>
<tr><td class='diff-marker'>&#160;</td><td class='diff-context'></td><td class='diff-marker'>&#160;</td><td class='diff-context'></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div>=<del class="diffchange diffchange-inline">Weekly Updates</del>=</div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div>== <ins class="diffchange diffchange-inline">Overview </ins>==</div></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div>==<del class="diffchange diffchange-inline">Week 11==</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div><del class="diffchange diffchange-inline">===Goals===</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div><del class="diffchange diffchange-inline">* For all:</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div><del class="diffchange diffchange-inline">** Outline your assigned paper on your user page and include a list of 10 defined terms from the paper.</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div><del class="diffchange diffchange-inline">*Nicole &amp; Brandon</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div><del class="diffchange diffchange-inline">**Prepare Journal Club presentation on the designated genome sequencing article</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div><del class="diffchange diffchange-inline">**Slides Due: by midnight, Tuesday, November 17</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div><del class="diffchange diffchange-inline">**Presentation Date: Tuesday, November 24</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div><del class="diffchange diffchange-inline">*Lena &amp; Mahrad</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div><del class="diffchange diffchange-inline">**Prepare Journal Club presentation on the designated microarray paper</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div><del class="diffchange diffchange-inline">**Slides Due: by midnight, Tuesday, November 17</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div><del class="diffchange diffchange-inline">**Presentation Date: Tuesday, November 17</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div></div></td></tr>
<tr><td class='diff-marker'>&#160;</td><td class='diff-context'></td><td class='diff-marker'>&#160;</td><td class='diff-context'></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div><del class="diffchange diffchange-inline">===Progress===</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class="diffchange diffchange-inline">The purpose of this assignment is</ins>:</div></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div><del class="diffchange diffchange-inline">*Nicole Anguiano (Coder): </del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div><del class="diffchange diffchange-inline">*Brandon Klein (QA): </del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div><del class="diffchange diffchange-inline">*Lena Olufson (GennMAPP): </del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div><del class="diffchange diffchange-inline">*Mahrad Saeedi (GennMAPP)</del>:</div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div></div></td></tr>
<tr><td class='diff-marker'>&#160;</td><td class='diff-context'></td><td class='diff-marker'>&#160;</td><td class='diff-context'></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div><del class="diffchange diffchange-inline">=== Meetings! ===</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class="diffchange diffchange-inline">* To familiarize yourself with the decoding the genetic code in a &quot;paper and pencil&quot; exercise, to motivate using a computer to do such work.</ins></div></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div>* <del class="diffchange diffchange-inline">TBD</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div>* <ins class="diffchange diffchange-inline">To begin comparing the genetic code to a computer code.</ins></div></td></tr>
<tr><td class='diff-marker'>&#160;</td><td class='diff-context'></td><td class='diff-marker'>&#160;</td><td class='diff-context'></td></tr>
Exception encountered, of type &quot;Error&quot;<br />
[d3df8836] /biodb/fall2015/index.php?action=history&amp;feed=atom&amp;title=Week_2   Error from line 434 of /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php: Call to undefined function each()<br />
Backtrace:<br />
#0 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(544): DiffEngine-&gt;diag()<br />
#1 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(344): DiffEngine-&gt;compareSeq()<br />
#2 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(227): DiffEngine-&gt;diffLocal()<br />
#3 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(721): DiffEngine-&gt;diff()<br />
#4 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(859): Diff-&gt;__construct()<br />
#5 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(980): MappedDiff-&gt;__construct()<br />
#6 /apps/xmlpipedb/biodb/fall2015/includes/diff/TableDiffFormatter.php(194): WordLevelDiff-&gt;__construct()<br />
#7 /apps/xmlpipedb/biodb/fall2015/includes/diff/DiffFormatter.php(140): TableDiffFormatter-&gt;changed()<br />
#8 /apps/xmlpipedb/biodb/fall2015/includes/diff/DiffFormatter.php(111): DiffFormatter-&gt;block()<br />
#9 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(888): DiffFormatter-&gt;format()<br />
#10 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(802): DifferenceEngine-&gt;generateTextDiffBody()<br />
#11 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(733): DifferenceEngine-&gt;generateContentDiffBody()<br />
#12 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(662): DifferenceEngine-&gt;getDiffBody()<br />
#13 /apps/xmlpipedb/biodb/fall2015/includes/FeedUtils.php(155): DifferenceEngine-&gt;getDiff()<br />
#14 /apps/xmlpipedb/biodb/fall2015/includes/actions/HistoryAction.php(325): FeedUtils::formatDiffRow()<br />
#15 /apps/xmlpipedb/biodb/fall2015/includes/actions/HistoryAction.php(290): HistoryAction-&gt;feedItem()<br />
#16 /apps/xmlpipedb/biodb/fall2015/includes/actions/HistoryAction.php(130): HistoryAction-&gt;feed()<br />
#17 /apps/xmlpipedb/biodb/fall2015/includes/actions/FormlessAction.php(43): HistoryAction-&gt;onView()<br />
#18 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(395): FormlessAction-&gt;show()<br />
#19 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(273): MediaWiki-&gt;performAction()<br />
#20 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(566): MediaWiki-&gt;performRequest()<br />
#21 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(414): MediaWiki-&gt;main()<br />
#22 /apps/xmlpipedb/biodb/fall2015/index.php(44): MediaWiki-&gt;run()<br />
#23 {main}<br />

