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		<id>https://xmlpipedb.lmucs.io/biodb/fall2015/index.php?action=history&amp;feed=atom&amp;title=Week_3_Notes</id>
		<title>Week 3 Notes - Revision history</title>
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		<updated>2026-06-07T12:03:50Z</updated>
		<subtitle>Revision history for this page on the wiki</subtitle>
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		<id>https://xmlpipedb.lmucs.io/biodb/fall2015/index.php?title=Week_3_Notes&amp;diff=1316&amp;oldid=prev</id>
		<title>Eyanosch: Notes from thursdays class</title>
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				<updated>2015-09-17T22:56:18Z</updated>
		
		<summary type="html">&lt;p&gt;Notes from thursdays class&lt;/p&gt;
&lt;p&gt;&lt;b&gt;New page&lt;/b&gt;&lt;/p&gt;&lt;div&gt;To log into putty&lt;br /&gt;
*Open putty, enter my.cs.lmu.edu&lt;br /&gt;
**eyanosch and password (personal)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Continuing command line exercises&lt;br /&gt;
cd ~dondi/xmlpipedb/data&lt;br /&gt;
 *to enter dondi&amp;#039;s files&lt;br /&gt;
&lt;br /&gt;
grep vs sed&lt;br /&gt;
grep &amp;quot;phrase or word to be searched&amp;quot;&lt;br /&gt;
sed &amp;quot;s/text to be substituted/text substituting it with/g&amp;quot;&lt;br /&gt;
&lt;br /&gt;
To combine commands use | inbetween commands&lt;br /&gt;
&lt;br /&gt;
* Ctrl D = signal for done&lt;br /&gt;
** this signals that you are done writing&lt;br /&gt;
&lt;br /&gt;
sed &amp;quot;s/d.g/&amp;amp;o/g&amp;quot;&lt;br /&gt;
 -This means that &amp;quot;d(any letter)g&amp;quot; be followed by &amp;quot;o&amp;quot;&lt;br /&gt;
&lt;br /&gt;
echo &amp;quot;Hello BIOL 367&amp;quot;&lt;br /&gt;
 - whatever you say is repeated to you&lt;br /&gt;
&lt;br /&gt;
the up arrow is a way to repeat a previous command&lt;br /&gt;
&lt;br /&gt;
Count the number of matches and types of unique patterns matched&lt;br /&gt;
java -jar xmlpipedb-match-1.1.1.jar &lt;br /&gt;
java -jar xmlpipedb-match-1.1.1.jar &amp;#039;Love&amp;quot;&lt;br /&gt;
*identifies actual pieces that match the pattern and lists statistics&lt;br /&gt;
&lt;br /&gt;
Square bracket in the pattern to match, [abc] the bracket will match only the symbols inside&lt;br /&gt;
 java - jar xmlpipedb-match-1.1.1.jar &amp;quot;do[gbd]&amp;quot;&lt;br /&gt;
 will search for anything with do(ending in either g,b, or d) since that is the search requirements entered&lt;br /&gt;
&lt;br /&gt;
^ - marker for the beginning of the line&lt;br /&gt;
$ - marker for the end of the line&lt;/div&gt;</summary>
		<author><name>Eyanosch</name></author>	</entry>

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