Week 9 - Revision history

Dondi: Remove Under Construction template.

2015-10-27T21:44:08Z

Remove Under Construction template.

Kdahlquist: /* Project Team Requests */ check back here for species!

2015-10-27T20:50:36Z

‎Project Team Requests: check back here for species!

Kdahlquist: /* Project Team Requests */ updated due date for team requests

2015-10-27T20:42:07Z

‎Project Team Requests: updated due date for team requests

Kdahlquist: /* Exporting a Vibrio cholerae Gene Database */ clarified Tues/thurs activity and QA

2015-10-27T20:17:20Z

‎Exporting a Vibrio cholerae Gene Database: clarified Tues/thurs activity and QA

← Older revision		Revision as of 21:44, 27 October 2015
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	'''This journal entry is due on Tuesday, November 3, at midnight PST.''' ''(Monday night/Tuesday morning)''		'''This journal entry is due on Tuesday, November 3, at midnight PST.''' ''(Monday night/Tuesday morning)''
−
−	~~{{ Under Construction }}~~

	== Overview ==		== Overview ==

@@ Line 74: / Line 74: @@
 * There will be four teams of 4 students.
 * Ultimately the teams will be assigned by Drs. Dahlquist and Dionsio based on balancing areas of expertise amongst the team members.  However, we would like to gather your input into the formation of the teams.  At this point in the semester, you have worked with at 10-11 other people in the class as partners on journal assignments.  Please send an e-mail to both Dr. Dahlquist and Dr. Dionisio '''''by midnight, Saturday, October 31 (Friday night/Saturday morning; Halloween!)''''' giving us the names of three other people in the class whom you want to be on your team (you can also choose people that haven't been your journal partner yet) and one person whom you prefer ''not'' to be on your team.  Please give us a short explanation as to why you are choosing those particular people.  We will consider all team requests, but we cannot guarantee that you will be matched with the people you picked.  These e-mails will remain confidential to the instructors and will not be shared with your classmates.
-* Also on November 3, the species will be assigned for the Final Class Project.  The assignment of species will be decided in class between the teams and the instructors after the teams have been announced.  So you can start to think about it before next week, a couple of the species under consideration by the instructors are:
+* Also on November 3, the species will be assigned for the Final Class Project.  The assignment of species will be decided in class between the teams and the instructors after the teams have been announced.  So you can start to think about it before next week, a couple of the species under consideration by the instructors are (check back for additions to this list):
 ** ''Shewanella oneidensis''
 ** ''Shigella flexneri''

@@ Line 73: / Line 73: @@
 * In class on November 3, the teams will be assigned for the Final Class Project.
 * There will be four teams of 4 students.
-* Ultimately the teams will be assigned by Drs. Dahlquist and Dionsio based on balancing areas of expertise amongst the team members.  However, we would like to gather your input into the formation of the teams.  At this point in the semester, you have worked with at 10-11 other people in the class as partners on journal assignments.  Please send an e-mail to both Dr. Dahlquist and Dr. Dionisio '''''by midnight, Monday, November 2''''' giving us the names of three other people in the class whom you want to be on your team (you can also choose people that haven't been your journal partner yet) and one person whom you prefer ''not'' to be on your team.  Please give us a short explanation as to why you are choosing those particular people.  We will consider all team requests, but we cannot guarantee that you will be matched with the people you picked.  These e-mails will remain confidential to the instructors and will not be shared with your classmates.
+* Ultimately the teams will be assigned by Drs. Dahlquist and Dionsio based on balancing areas of expertise amongst the team members.  However, we would like to gather your input into the formation of the teams.  At this point in the semester, you have worked with at 10-11 other people in the class as partners on journal assignments.  Please send an e-mail to both Dr. Dahlquist and Dr. Dionisio '''''by midnight, Saturday, October 31 (Friday night/Saturday morning; Halloween!)''''' giving us the names of three other people in the class whom you want to be on your team (you can also choose people that haven't been your journal partner yet) and one person whom you prefer ''not'' to be on your team.  Please give us a short explanation as to why you are choosing those particular people.  We will consider all team requests, but we cannot guarantee that you will be matched with the people you picked.  These e-mails will remain confidential to the instructors and will not be shared with your classmates.
 * Also on November 3, the species will be assigned for the Final Class Project.  The assignment of species will be decided in class between the teams and the instructors after the teams have been announced.  So you can start to think about it before next week, a couple of the species under consideration by the instructors are:
 ** ''Shewanella oneidensis''

@@ Line 33: / Line 33: @@
 * Jake Woodlee, Erich Yanoschik
-== Exporting a ''Vibrio cholerae'' Gene Database ==
+== Tuesday, October 27: Exporting a ''Vibrio cholerae'' Gene Database ==
 * [[Running_GenMAPP_Builder | Perform an export of the ''Vibrio cholerae'' GenMAPP Gene Database following the instructions on this page.]]
-* When downloading data and beginning your export, begin to fill out a Gene Database Testing Report. [[Gene_Database_Testing_Report_Sample | Copy the wiki code from this page and paste it into your individual journal page.]]  Then answer the questions asked.  Once your export is complete, then follow the instructions below for quality assurance.
+* Note that you will actually start your Quality Assurance process when downloading data and beginning your export.  On Tuesday, you will need to begin to fill out a Gene Database Testing Report. [[Gene_Database_Testing_Report_Sample | Copy the wiki code from this page and paste it into your individual journal page.]]  Then answer the questions asked.  Once your export is complete, then follow the instructions below for quality assurance.
-=== Performing Quality Assurance on the ''Vibrio cholerae'' Gene Database ===
+=== Thursday, October 28: Performing Quality Assurance on the ''Vibrio cholerae'' Gene Database ===
 * Using the ''Vibrio cholerae'' GenMAPP Gene Database that you exported, perform the [[How Do I Count Thee? Let Me Count The Ways|steps described on this page]] for your respective XML, PostgreSQL, and Microsoft Access data, and record the data in your [[Gene Database Testing Report Sample| Gene Database Testing Report]].