Difference between revisions of "Software Configuration"
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== Software and Configuration for PCs in Seaver 120 == | == Software and Configuration for PCs in Seaver 120 == | ||
| − | * Latest Update for Mozilla FireFox (40.0.2) | + | === Browsers === |
| + | |||
| + | * Latest Update for Mozilla FireFox (40.0.2 or higher) | ||
** Options set to default downloads to Desktop and to ask each time a file is downloaded | ** Options set to default downloads to Desktop and to ask each time a file is downloaded | ||
*** Go to the Options menu, General options | *** Go to the Options menu, General options | ||
| Line 7: | Line 9: | ||
*** Second, click the radio button next to "Always ask me where to save files" | *** Second, click the radio button next to "Always ask me where to save files" | ||
:::[[Image:FireFox_Download_Settings.jpg]] | :::[[Image:FireFox_Download_Settings.jpg]] | ||
| − | * Latest update for Google Chrome (Version 44.0.2403.157 m) | + | * Latest update for Google Chrome (Version 44.0.2403.157 m or higher) |
** Options set to default downloads to Desktop and to ask each time a file is downloaded | ** Options set to default downloads to Desktop and to ask each time a file is downloaded | ||
*** Go to Settings page, click on link to "Show advanced settings" | *** Go to Settings page, click on link to "Show advanced settings" | ||
| Line 13: | Line 15: | ||
*** Second, check the box next to "Ask where to save each file before downloading" | *** Second, check the box next to "Ask where to save each file before downloading" | ||
:::[[Image:Chrome_Download_Settings.jpg]] | :::[[Image:Chrome_Download_Settings.jpg]] | ||
| + | |||
| + | === General Utilities Need for Course === | ||
| + | |||
| + | * 7-zip | ||
| + | ** [http://www.7-zip.org/ Download page] | ||
| + | * PuTTY | ||
| + | ** [http://www.chiark.greenend.org.uk/~sgtatham/putty/download.html Download page] | ||
| + | ** For Windows on Intel x86 putty.exe | ||
| + | |||
| + | === Software Required for Final Project === | ||
| + | |||
| + | ==== Required for Gene Database Exports, Quality Assurance, Data Analysis ==== | ||
| + | |||
* PostgreSQL 9.4 (configured to save databases in thawspace, as per Dondi's instructions) | * PostgreSQL 9.4 (configured to save databases in thawspace, as per Dondi's instructions) | ||
** [http://www.enterprisedb.com/products-services-training/pgdownload#windows Download page] | ** [http://www.enterprisedb.com/products-services-training/pgdownload#windows Download page] | ||
| Line 19: | Line 34: | ||
** [http://www.oracle.com/technetwork/java/javase/downloads/jdk8-downloads-2133151.html Download page] | ** [http://www.oracle.com/technetwork/java/javase/downloads/jdk8-downloads-2133151.html Download page] | ||
** File to download is: jdk-8u60-windows-x64.exe | ** File to download is: jdk-8u60-windows-x64.exe | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
* GenMAPP 2.1 | * GenMAPP 2.1 | ||
| − | ** | + | ** [https://github.com/GenMAPPCS/genmapp Download page] |
| − | ** | + | ** Installer is "GenMAPPv2Setup.exe" |
| + | *** Do '''not''' check for updates or download databases during installation (server no longer exists) | ||
| + | *** Run GenMAPP for the first time to go through the configuration | ||
| + | *** Go to Tools > Options > Other, uncheck box for "Automatically check for program updates" | ||
* firstobject XML editor | * firstobject XML editor | ||
** [http://www.firstobject.com/dn_editor.htm Download page] | ** [http://www.firstobject.com/dn_editor.htm Download page] | ||
** 2.4.2.431 installer (624k) 23-Apr-2011 | ** 2.4.2.431 installer (624k) 23-Apr-2011 | ||
| − | |||
| − | |||
| − | |||
| + | ==== Required for Changes to Code ==== | ||
| + | * [http://www.eclipse.org Eclipse] | ||
| + | ** Eclipse IDE for Java Developers [http://www.eclipse.org/downloads/packages/eclipse-ide-java-developers/marsr download page] | ||
| + | ** Eclipse IDE for Java EE Developers Version [http://www.eclipse.org/downloads/packages/eclipse-ide-java-ee-developers/marsr download page] (This comes with more pre-installed tools—recommended only if you are interested in using Eclipse beyond this course) | ||
| + | * git | ||
| + | ** GUI version preinstalled with Eclipse; [https://git-scm.com/downloads standalone version available here] | ||
| + | ** Mac OS X users may also acquire git via Apple’s [https://developer.apple.com/downloads/ Command Line Tools package (registration required but free)] | ||
| + | * Ant | ||
| + | ** GUI version also available with Eclipse; [http://ant.apache.org/bindownload.cgi standalone download available here] | ||
=== Run Windows Update === | === Run Windows Update === | ||
Latest revision as of 22:28, 24 August 2015
Software and Configuration for PCs in Seaver 120
Browsers
- Latest Update for Mozilla FireFox (40.0.2 or higher)
- Options set to default downloads to Desktop and to ask each time a file is downloaded
- Go to the Options menu, General options
- First, under the "Downloads" section, next to "Save files to" click the "Browse" button, select the Desktop, and click the OK button.
- Second, click the radio button next to "Always ask me where to save files"
- Options set to default downloads to Desktop and to ask each time a file is downloaded
- Latest update for Google Chrome (Version 44.0.2403.157 m or higher)
- Options set to default downloads to Desktop and to ask each time a file is downloaded
- Go to Settings page, click on link to "Show advanced settings"
- First, under the "Downloads" section, click the "Change..." button, select the Desktop, and click the OK button.
- Second, check the box next to "Ask where to save each file before downloading"
- Options set to default downloads to Desktop and to ask each time a file is downloaded
General Utilities Need for Course
- 7-zip
- PuTTY
- Download page
- For Windows on Intel x86 putty.exe
Software Required for Final Project
Required for Gene Database Exports, Quality Assurance, Data Analysis
- PostgreSQL 9.4 (configured to save databases in thawspace, as per Dondi's instructions)
- Download page
- Version 9.4.4, Win x86-64
- Java JDK 1.8 64-bit
- Download page
- File to download is: jdk-8u60-windows-x64.exe
- GenMAPP 2.1
- Download page
- Installer is "GenMAPPv2Setup.exe"
- Do not check for updates or download databases during installation (server no longer exists)
- Run GenMAPP for the first time to go through the configuration
- Go to Tools > Options > Other, uncheck box for "Automatically check for program updates"
- firstobject XML editor
- Download page
- 2.4.2.431 installer (624k) 23-Apr-2011
Required for Changes to Code
- Eclipse
- Eclipse IDE for Java Developers download page
- Eclipse IDE for Java EE Developers Version download page (This comes with more pre-installed tools—recommended only if you are interested in using Eclipse beyond this course)
- git
- GUI version preinstalled with Eclipse; standalone version available here
- Mac OS X users may also acquire git via Apple’s Command Line Tools package (registration required but free)
- Ant
- GUI version also available with Eclipse; standalone download available here
Run Windows Update
Set Windows to View File Extensions
- The Windows 7 operating systems defaults to hiding file extensions. To turn them back on, do the following:
- Go to the Start menu and select "Control Panel".
- In the window that appears, search for "Folder Options" in the search field in the upper right hand corner.
- Click on "Folder Options" in the main window.
- When the Folder Options window appears, click on the View tab.
- Uncheck the box for "Hide extensions for known file types".
- Click the OK button.
