Difference between revisions of "Emilysimso Week 2"

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(Began assignment, reading frames)
 
(Added template (?))
 
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** 3'-gcauacgauuaugguacaaggcgcauauugggucggcggucaaggcgaccgccguaaaau-5' (this is the complementary strand to the mRNA)
 
** 3'-gcauacgauuaugguacaaggcgcauauugggucggcggucaaggcgaccgccguaaaau-5' (this is the complementary strand to the mRNA)
  
−
**Reading Frames:
+
*Reading Frames:
−
***+1: 5'-cgu aug cua aua cca ugu ucc gcg uau aac cca gcc gcc agu ucc gcu ggc ggc auu uua-3'
+
**+1: 5'-cgu aug cua aua cca ugu ucc gcg uau aac cca gcc gcc agu ucc gcu ggc ggc auu uua-3'
−
***+2: 5'-c gua ugc uaa uac cau guu ccg cgu aua acc cag ccg cca guu ccg cug gcg gca uuu ua-3'
+
*** Amino Acids: R M L I P C S A Y N P A A S S A G G I L
−
*** +3: 5'-cg uau gcu aau acc aug uuc cgc gua uaa ccc agc cgc cag uuc cgc ugg cgg cau uuu a-3'
+
**+2: 5'-c gua ugc uaa uac cau guu ccg cgu aua acc cag ccg cca guu ccg cug gcg gca uuu ua-3'
−
*** -1: 5'-uaa aau gcc gcc agc gga acu ggc ggc ugg guu aua cgc gga acu agg uau uag cau acg-3'
+
*** Amino Acids: V C stop
−
*** -2: 5'-u aaa aug ccg cca gcg gaa cug gcg gcu ggg uua uac gcg gaa cua ggu auu agc aua cg-3'
+
** +3: 5'-cg uau gcu aau acc aug uuc cgc gua uaa ccc agc cgc cag uuc cgc ugg cgg cau uuu a-3'
−
*** -3: 5'-ua aaa ugc cgc cag cgg aac ugg cgg cug ggu uau acg cgg aac uag gua uua gca uac g-3'
+
*** Amino Acids: Y A N T M F R V stop
 +
** -1: 5'-uaa aau gcc gcc agc gga acu ggc ggc ugg guu aua cgc gga aca agg uau uag cau acg-3'
 +
*** Amino Acids: stop N A A S G T G T G G W V I R G T R Y stop
 +
*** This strand would stop after the first codon (would not code for any amino acids)
 +
** -2: 5'-u aaa aug ccg cca gcg gaa cug gcg gcu ggg uua uac gcg gaa caa ggu auu agc aua cg-3'
 +
*** Amino Acids: K M P P A E L A A G L Y A E H G I S I
 +
** -3: 5'-ua aaa ugc cgc cag cgg aac ugg cgg cug ggu uau acg cgg aac aag gua uua gca uac g-3'
 +
*** Amino Acids: K C R Q R N W R L G Y T R N K V L A Y
 +
 
 +
* Open Reading Frames (do not contain stop codons)
 +
** +1, -2, and -3 do not contain stop codons
 +
 
 +
{{Template: Esimso entries etc}}

Latest revision as of 17:49, 20 September 2015

User:Emilysimso

  • Write out the complementary strand of DNA below the strand shown and be sure to label the 5’ and 3’ ends of the complementary strand. ( All questions taken from Week 2 assignment)
    • 5’-cgtatgctaataccatgttccgcgtataacccagccgccagttccgctggcggcatttta-3’
    • 3'-gcatacgattatggtacaaggcgcatattgggtcggcggtcaaggcgaccgccgtaaaat-5'
  • There are six possible reading frames in double-stranded DNA. Using the genetic code, translate all possible reading frames of this DNA sequence, keeping in mind the following rules.
    • 5'-cguaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuua-3' (this is the strand of mRNA copied from the DNA template)
    • 3'-gcauacgauuaugguacaaggcgcauauugggucggcggucaaggcgaccgccguaaaau-5' (this is the complementary strand to the mRNA)
  • Reading Frames:
    • +1: 5'-cgu aug cua aua cca ugu ucc gcg uau aac cca gcc gcc agu ucc gcu ggc ggc auu uua-3'
      • Amino Acids: R M L I P C S A Y N P A A S S A G G I L
    • +2: 5'-c gua ugc uaa uac cau guu ccg cgu aua acc cag ccg cca guu ccg cug gcg gca uuu ua-3'
      • Amino Acids: V C stop
    • +3: 5'-cg uau gcu aau acc aug uuc cgc gua uaa ccc agc cgc cag uuc cgc ugg cgg cau uuu a-3'
      • Amino Acids: Y A N T M F R V stop
    • -1: 5'-uaa aau gcc gcc agc gga acu ggc ggc ugg guu aua cgc gga aca agg uau uag cau acg-3'
      • Amino Acids: stop N A A S G T G T G G W V I R G T R Y stop
      • This strand would stop after the first codon (would not code for any amino acids)
    • -2: 5'-u aaa aug ccg cca gcg gaa cug gcg gcu ggg uua uac gcg gaa caa ggu auu agc aua cg-3'
      • Amino Acids: K M P P A E L A A G L Y A E H G I S I
    • -3: 5'-ua aaa ugc cgc cag cgg aac ugg cgg cug ggu uau acg cgg aac aag gua uua gca uac g-3'
      • Amino Acids: K C R Q R N W R L G Y T R N K V L A Y
  • Open Reading Frames (do not contain stop codons)
    • +1, -2, and -3 do not contain stop codons

Weekly Assignment Information

User: Emilysimso

Assignments

Individual Journal Entries

Class Journal Entries

Group Project

Heavy Metal HaterZ

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