Difference between revisions of "Anuvarsh Week 8"
(did some minor formatting updates) |
(→Electronic Lab Notebook: added .gex file) |
||
| Line 2: | Line 2: | ||
*[[Media:Merrell_Compiled_Raw_Data_Vibrio_AV_20151015.xls|Part 1 Spreadsheet from Class on 10/15/2015]] | *[[Media:Merrell_Compiled_Raw_Data_Vibrio_AV_20151015.xls|Part 1 Spreadsheet from Class on 10/15/2015]] | ||
*[[Media:Merrell_Compiled_Raw_Data_Vibrio_AV_20151015.txt|Part 2 Text File from Class on 10/20/2015]] | *[[Media:Merrell_Compiled_Raw_Data_Vibrio_AV_20151015.txt|Part 2 Text File from Class on 10/20/2015]] | ||
| − | *[[Media:Merrell_Compiled_Raw_Data_Vibrio_AV_20151015.EX.txt |Exceptions List from Raw Data Conversion on GenMAPP]] | + | *[[Media:Merrell_Compiled_Raw_Data_Vibrio_AV_20151015.EX.txt|Exceptions List from Raw Data Conversion on GenMAPP]] |
| + | *[[Media:Merrell_Compiled_Raw_Data_Vibrio_AV_20151015.gex|GenMAPP generated file after uploading data]] | ||
==Statistical Analysis of Vibrio cholerae Microarray Data (Part 1)== | ==Statistical Analysis of Vibrio cholerae Microarray Data (Part 1)== | ||
Revision as of 22:50, 20 October 2015
Contents
Electronic Lab Notebook
- Part 1 Spreadsheet from Class on 10/15/2015
- Part 2 Text File from Class on 10/20/2015
- Exceptions List from Raw Data Conversion on GenMAPP
- GenMAPP generated file after uploading data
Statistical Analysis of Vibrio cholerae Microarray Data (Part 1)
MAPPFinder Analysis of Vibrio cholerae Microarray Data (Part 2)
Reminders
- Finish the Sanity Check
- I used the 2010 Vibrio Cholera database
- When uploading my tab delimited file to the GenMAPP software for conversion, 121 errors were detected in my raw data.
- My partner, Brandon L., had 772 errors detected in his raw data conversion while using the 2009 Vibrio Cholera database.
- This difference in errors is most likely due to the extensiveness of our databases. Because Brandon was using an older version of the database while I was using a newer version, it is possible that his version had fewer genes than mine.
Other Links
User Page: Anindita Varshneya
Class Page: BIOL/CMSI 367: Biological Databases, Fall 2015
Group Page: GÉNialOMICS
Assignment Pages
Week 1 Assignment
Week 2 Assignment
Week 3 Assignment
Week 4 Assignment
Week 5 Assignment
Week 6 Assignment
Week 7 Assignment
Week 8 Assignment
Week 9 Assignment
Week 10 Assignment
Week 11 Assignment
Week 12 Assignment
No Week 13 Assignment
Week 14 Assignment
Week 15 Assignment
Individual Journals
Individual Journal Week 2
Individual Journal Week 3
Individual Journal Week 4
Individual Journal Week 5
Individual Journal Week 6
Individual Journal Week 7
Individual Journal Week 8
Individual Journal Week 9
Individual Journal Week 10
Individual Journal Week 11
Individual Journal Week 12
Individual Journal Week 14
Individual Journal Week 15
Class Journal Week 1
Class Journal Week 2
Class Journal Week 3
Class Journal Week 4
Class Journal Week 5
Class Journal Week 6
Class Journal Week 7
Class Journal Week 8
Class Journal Week 9
GÉNialOMICS Journal Week 10
GÉNialOMICS Journal Week 11
GÉNialOMICS Journal Week 12
GÉNialOMICS Journal Week 14
GÉNialOMICS Journal Week 15
