| | * To see a list of the most significant Gene Ontology terms, click on the menu item "Show Ranked List". | | * To see a list of the most significant Gene Ontology terms, click on the menu item "Show Ranked List". |
| | ***The terms are different. Although the microarray data should be the same, the 2009 database lists fewer genes. | | ***The terms are different. Although the microarray data should be the same, the 2009 database lists fewer genes. |
| | * One of the things you can do in MAPPFinder is to find the Gene Ontology term(s) with which a particular gene is associated. First, in the main MAPPFinder Browser window, click on the button "Collapse the Tree". Then, you can search for the genes that were mentioned by Merrell et al. (2002), VC0028, VC0941, VC0869, VC0051, VC0647, VC0468, VC2350, and VCA0583. Type the identifier for one of these genes into the MAPPFinder browser gene ID search field. Choose "OrderedLocusNames" from the drop-down menu to the right of the search field. Click on the GeneID Search button. The GO term(s) that are associated with that gene will be highlighted in blue. '''List the GO terms associated with each of those genes in your individual journal. (Note: they might not all be found.) Are they the same as your partner who is using a different Gene Database? Why or why not?''' | | * One of the things you can do in MAPPFinder is to find the Gene Ontology term(s) with which a particular gene is associated. First, in the main MAPPFinder Browser window, click on the button "Collapse the Tree". Then, you can search for the genes that were mentioned by Merrell et al. (2002), VC0028, VC0941, VC0869, VC0051, VC0647, VC0468, VC2350, and VCA0583. Type the identifier for one of these genes into the MAPPFinder browser gene ID search field. Choose "OrderedLocusNames" from the drop-down menu to the right of the search field. Click on the GeneID Search button. The GO term(s) that are associated with that gene will be highlighted in blue. '''List the GO terms associated with each of those genes in your individual journal. (Note: they might not all be found.) Are they the same as your partner who is using a different Gene Database? Why or why not?''' |
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