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| Merrell et al. (2002) report that genes with IDs: VC0028, VC0941, VC0869, VC0051, VC0647, VC0468, VC2350, and VCA0583 were all significantly changed in their data. However, in our data... | | Merrell et al. (2002) report that genes with IDs: VC0028, VC0941, VC0869, VC0051, VC0647, VC0468, VC2350, and VCA0583 were all significantly changed in their data. However, in our data... |
| *(All genes were checked by searching the gene name in the "ID" column of the Excel spreadsheet.) | | *(All genes were checked by searching the gene name in the "ID" column of the Excel spreadsheet.) |
− | *VC0028 (two entries exist) | + | *'''VC0028 (two entries exist)''' |
− | **Fold Change: 1.67, 1.27 | + | **'''Fold Change: 1.67, 1.27''' |
− | **P value: 0.0474, 0.0692 | + | **'''P value: 0.0474, 0.0692''' |
− | **Significantly changed? The first entry of this gene was significantly changed, but not the second. | + | **'''Significantly changed? The first entry of this gene was significantly changed, but not the second.''' |
− | *VC0941 (two entries exist) | + | *'''VC0941 (two entries exist)''' |
− | **Fold Change: 0.09, -0.28 | + | **'''Fold Change: 0.09, -0.28''' |
− | **P value: 0.6759, 0.1636 | + | **'''P value: 0.6759, 0.1636''' |
− | **Significantly changed? Neither entry was significantly changed. | + | **'''Significantly changed? Neither entry was significantly changed.''' |
− | *VC0869 (five entries exist) | + | *'''VC0869 (five entries exist)''' |
− | **Fold Change: 1.59, 1.95, 2.2, 1.5, 2.12 | + | **'''Fold Change: 1.59, 1.95, 2.2, 1.5, 2.12''' |
− | **P value: 0.0463, 0.0227, 0.002, 0.0174, 0.02 | + | **'''P value: 0.0463, 0.0227, 0.002, 0.0174, 0.02''' |
− | **Significantly changed? All entries were significantly changed. | + | **'''Significantly changed? All entries were significantly changed.''' |
− | *VC0051 (two entries exist) | + | *'''VC0051 (two entries exist)''' |
− | **Fold Change: 1.92, 1.89 | + | **'''Fold Change: 1.92, 1.89''' |
− | **P value: 0.0139, 0.016 | + | **'''P value: 0.0139, 0.016''' |
− | **Significantly changed? Both entries were significantly changed. | + | **'''Significantly changed? Both entries were significantly changed.''' |
− | *VC0647 (three entries exist) | + | *'''VC0647 (three entries exist)''' |
− | **Fold Change: -1.11, -0.94, -1.05 | + | **'''Fold Change: -1.11, -0.94, -1.05''' |
− | **P value: 0.0003, 0.0125, 0.0051 | + | **'''P value: 0.0003, 0.0125, 0.0051''' |
− | **Significantly changed? All entries were significantly changed. | + | **'''Significantly changed? All entries were significantly changed.''' |
− | *VC0468 (one entry exists) | + | *'''VC0468 (one entry exists)''' |
− | **Fold Change: -0.17 | + | **'''Fold Change: -0.17''' |
− | **P value: 0.335 | + | **'''P value: 0.335''' |
− | **Significantly changed? Not significantly changed. | + | **'''Significantly changed? Not significantly changed.''' |
− | *VC2350 (one entry exists) | + | *'''VC2350 (one entry exists)''' |
− | **Fold Change: -2.4 | + | **'''Fold Change: -2.4''' |
− | **P value: 0.013 | + | **'''P value: 0.013''' |
− | **Significantly changed? Significantly changed. | + | **'''Significantly changed? Significantly changed.''' |
− | *VCA0583 (one entry exists) | + | *'''VCA0583 (one entry exists)''' |
− | **Fold Change: 1.06 | + | **'''Fold Change: 1.06''' |
− | **P value: 0.1011 | + | **'''P value: 0.1011''' |
− | **Significantly changed? Not significantly changed. | + | **'''Significantly changed? Not significantly changed.''' |
| | | |
| =MAPPFinder Analysis of Vibrio cholerae Microarray Data (Part 2)= | | =MAPPFinder Analysis of Vibrio cholerae Microarray Data (Part 2)= |
| ==Map Onto Biological Pathways (GenMAPP & MAPPFinder== | | ==Map Onto Biological Pathways (GenMAPP & MAPPFinder== |
| *I launched the GenMAPP software as it was installed on the lab computers in Seaver 120 as of October 20, 2015. | | *I launched the GenMAPP software as it was installed on the lab computers in Seaver 120 as of October 20, 2015. |
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#0 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(544): DiffEngine->diag()
#1 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(344): DiffEngine->compareSeq()
#2 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(227): DiffEngine->diffLocal()
#3 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(721): DiffEngine->diff()
#4 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(859): Diff->__construct()
#5 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(980): MappedDiff->__construct()
#6 /apps/xmlpipedb/biodb/fall2015/includes/diff/TableDiffFormatter.php(194): WordLevelDiff->__construct()
#7 /apps/xmlpipedb/biodb/fall2015/includes/diff/DiffFormatter.php(140): TableDiffFormatter->changed()
#8 /apps/xmlpipedb/biodb/fall2015/includes/diff/DiffFormatter.php(82): DiffFormatter->block()
#9 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(888): DiffFormatter->format()
#10 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(802): DifferenceEngine->generateTextDiffBody()
#11 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(733): DifferenceEngine->generateContentDiffBody()
#12 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(662): DifferenceEngine->getDiffBody()
#13 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(632): DifferenceEngine->getDiff()
#14 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(453): DifferenceEngine->showDiff()
#15 /apps/xmlpipedb/biodb/fall2015/includes/page/Article.php(795): DifferenceEngine->showDiffPage()
#16 /apps/xmlpipedb/biodb/fall2015/includes/page/Article.php(506): Article->showDiffPage()
#17 /apps/xmlpipedb/biodb/fall2015/includes/actions/ViewAction.php(44): Article->view()
#18 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(395): ViewAction->show()
#19 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(273): MediaWiki->performAction()
#20 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(566): MediaWiki->performRequest()
#21 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(414): MediaWiki->main()
#22 /apps/xmlpipedb/biodb/fall2015/index.php(44): MediaWiki->run()
#23 {main}