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|
| | *The results file, in the format "XXX-CriterionX-GO.txt" was copied and pasted in the folder housing all of the files related to this investigation (XXX = name given to file, CriterionX refers to the Criterion #; Criterion0 refers to the Increased criterion, Criterion1 refers to the Decreased criterion, if the Increased criterion was done first) | | *The results file, in the format "XXX-CriterionX-GO.txt" was copied and pasted in the folder housing all of the files related to this investigation (XXX = name given to file, CriterionX refers to the Criterion #; Criterion0 refers to the Increased criterion, Criterion1 refers to the Decreased criterion, if the Increased criterion was done first) |
| | *The "CriterionGO" file was opened via Excel in order to show the results in a tabular format | | *The "CriterionGO" file was opened via Excel in order to show the results in a tabular format |
| − | *The top rows of the opened file (in Excel) were examined; these are rows of information that give background information as to how MAPPFinder made the calculations | + | *The top rows of the opened file (in Excel) were examined; these are rows of information that give background information as to how MAPPFinder made the calculations: |
| | **[[File:MAPPFINDER INFO BL.png]] | | **[[File:MAPPFINDER INFO BL.png]] |
| | + | *Comparing the top rows from the '''2010 Database''' to those found by my partner, Anu, using the '''2009 Database''', it was noticed that: |
| | + | **The numbers for ''probes meeting the filter linked to a UniProt ID'', ''for genes meeting the criterion linked to a GO term'', ''probes linked to a UniProt ID'', ''genes linked to a GO term'', and ''The z score is based on an N of... and a R of...'' were higher in what was found by Anu than what was found using the older database. This difference is likely due to the fact that the 2010 database covers more genes (less errors) and, thus, would lead to more genes being linked to GO terms and UniProt ID's. The smaller amounts of linked probes/genes was likely responsible for the smaller numbers (last row) that are involved in the z score calculations by MAPPfinder. |
| | *The list in the file was filtered in order to show the top GO terms represented in the data for the "Increased" criterion | | *The list in the file was filtered in order to show the top GO terms represented in the data for the "Increased" criterion |
| | *A cell was clicked in the row of headers and the autofilter was turned on (Data menu -> Filter > Autofilter) | | *A cell was clicked in the row of headers and the autofilter was turned on (Data menu -> Filter > Autofilter) |
|
|
| | *'''Group 8 (Bold Black Borders)''': This group is composed of somewhat miscellaneous terms that did not have clear relationships with each other and with other terms (in MAPPfinder). Two of the three terms are involved with monocarboxylic acids (transport and transport activity across membranes). The final term is extracellular region and is related to the space outside of the bacterium in question. | | *'''Group 8 (Bold Black Borders)''': This group is composed of somewhat miscellaneous terms that did not have clear relationships with each other and with other terms (in MAPPfinder). Two of the three terms are involved with monocarboxylic acids (transport and transport activity across membranes). The final term is extracellular region and is related to the space outside of the bacterium in question. |
| | ===Result Interpretation=== | | ===Result Interpretation=== |
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#0 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(544): DiffEngine->diag()
#1 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(344): DiffEngine->compareSeq()
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#23 {main}