*'''Web of Science''' was entered, on 11/8, and a search was conducted using the keywords <code>Burkholderia cenocepacia genome</code> via  search by ''Topic''; this search yielded '''104 results''' (93 articles and 9 review papers out of the 104). Adding the keywords <code>nucleotide sequence</code> led to there being '''8 results''' (genome paper on the J2315 strain was the first result).
 
*'''Web of Science''' was entered, on 11/8, and a search was conducted using the keywords <code>Burkholderia cenocepacia genome</code> via  search by ''Topic''; this search yielded '''104 results''' (93 articles and 9 review papers out of the 104). Adding the keywords <code>nucleotide sequence</code> led to there being '''8 results''' (genome paper on the J2315 strain was the first result).
 
===Advanced Searches===
 
===Advanced Searches===
*'''Pubmed''' was entered on 11/9 and an advanced search was conducted using <code>((((genome[Title/Abstract]) AND burkholderia cenocepacia[Text Word]) AND J2315[Text Word]))</code>; it was decided that the strain of focus will be J2315 and, thus, ''J2315'' was searched for through the use of the ''[Text Word]'' advanced search field. It was also determined that the word ''genome'' would go well with the ''[Title/Abstract]'' (it was thought that this will would make the results focus on genomes and genome-related experimental work). ''Burkholderia Cenocepacia'' was also used with the ''[Text Word]'' field. In the end, this advanced search led to ''25 results'', with one of the results being a genome paper on J2315 (the rest being research that, presumably, stemmed from that work).
+
*'''Pubmed''' was entered on 11/9 and an advanced search was conducted using <code>((((genome[Title/Abstract]) AND burkholderia cenocepacia[Text Word]) AND J2315[Text Word]))</code>; it was decided that the strain of focus will be J2315 and, thus, ''J2315'' was searched for through the use of the ''[Text Word]'' advanced search field. It was also determined that the word ''genome'' would go well with the ''[Title/Abstract]'' (it was thought that this will would make the results focus on genomes and genome-related experimental work). ''Burkholderia Cenocepacia'' was also used with the ''[Text Word]'' field. In the end, this advanced search led to '''25 results''', with one of the results being a genome paper on J2315 (the rest being research that, presumably, stemmed from that work).
 
*'''Google Scholar''' was entered on 11/9 and an initial search was conducted with <code>burkholderia cenocepacia genome j2315</code>, this led to '''about 933 results''' with the top result being the genome paper of interest (''The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients''); the rest of the papers, as was previously seen, were related to work tied to the genome of the bacteria. The advanced search menu item was clicked (by pressing the arrow button to the right of the ''My Citations'' menu item) and the advanced search overlay popped up; I decided to work with the ''where my words occur'' section and I changed the setting to ''in the title of the article''. Using the advanced search <code>allintitle: burkholderia cenocepacia genome j2315</code>, I found '''7 results''' and the genome paper of choice was the top result.
 
*'''Google Scholar''' was entered on 11/9 and an initial search was conducted with <code>burkholderia cenocepacia genome j2315</code>, this led to '''about 933 results''' with the top result being the genome paper of interest (''The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients''); the rest of the papers, as was previously seen, were related to work tied to the genome of the bacteria. The advanced search menu item was clicked (by pressing the arrow button to the right of the ''My Citations'' menu item) and the advanced search overlay popped up; I decided to work with the ''where my words occur'' section and I changed the setting to ''in the title of the article''. Using the advanced search <code>allintitle: burkholderia cenocepacia genome j2315</code>, I found '''7 results''' and the genome paper of choice was the top result.
 
*'''Web of Science''' was entered on 11/9 and ''Basic Search'' was set to ''Advanced Search'' through the drop-down menu next to the Basic Search heading. I noticed that there was a little help section next to the search box which listed the Booleans and Field Tags that can be used. I decided to use the TS (topic), TI (title, and the AND boolean; I used <code>TS=(burkholderia cenocepacia AND J2315 AND cystic fibrosis) AND TI=(genome)</code> for my advanced search which led to '''6 results''', which included the genome paper of interest.
 
*'''Web of Science''' was entered on 11/9 and ''Basic Search'' was set to ''Advanced Search'' through the drop-down menu next to the Basic Search heading. I noticed that there was a little help section next to the search box which listed the Booleans and Field Tags that can be used. I decided to use the TS (topic), TI (title, and the AND boolean; I used <code>TS=(burkholderia cenocepacia AND J2315 AND cystic fibrosis) AND TI=(genome)</code> for my advanced search which led to '''6 results''', which included the genome paper of interest.
   
===Prospective Search===
 
===Prospective Search===
 
*Web of Science was entered on 11/9/15
 
*Web of Science was entered on 11/9/15
 
*How many articles does this article cite: 150
 
*How many articles does this article cite: 150
 
*How many articles cite this article: 128 (from Web of Science Core Collection), 468 (in All Databases)
 
*How many articles cite this article: 128 (from Web of Science Core Collection), 468 (in All Databases)
Exception encountered, of type "Error"
[28070fe0] /biodb/fall2015/index.php?diff=5931&oldid=5867&title=Blitvak_Week_10 Error from line 434 of /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php: Call to undefined function each()
Backtrace:
#0 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(544): DiffEngine->diag()
#1 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(344): DiffEngine->compareSeq()
#2 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(227): DiffEngine->diffLocal()
#3 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(721): DiffEngine->diff()
#4 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(859): Diff->__construct()
#5 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(980): MappedDiff->__construct()
#6 /apps/xmlpipedb/biodb/fall2015/includes/diff/TableDiffFormatter.php(194): WordLevelDiff->__construct()
#7 /apps/xmlpipedb/biodb/fall2015/includes/diff/DiffFormatter.php(140): TableDiffFormatter->changed()
#8 /apps/xmlpipedb/biodb/fall2015/includes/diff/DiffFormatter.php(111): DiffFormatter->block()
#9 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(888): DiffFormatter->format()
#10 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(802): DifferenceEngine->generateTextDiffBody()
#11 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(733): DifferenceEngine->generateContentDiffBody()
#12 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(662): DifferenceEngine->getDiffBody()
#13 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(632): DifferenceEngine->getDiff()
#14 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(453): DifferenceEngine->showDiff()
#15 /apps/xmlpipedb/biodb/fall2015/includes/page/Article.php(795): DifferenceEngine->showDiffPage()
#16 /apps/xmlpipedb/biodb/fall2015/includes/page/Article.php(506): Article->showDiffPage()
#17 /apps/xmlpipedb/biodb/fall2015/includes/actions/ViewAction.php(44): Article->view()
#18 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(395): ViewAction->show()
#19 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(273): MediaWiki->performAction()
#20 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(566): MediaWiki->performRequest()
#21 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(414): MediaWiki->main()
#22 /apps/xmlpipedb/biodb/fall2015/index.php(44): MediaWiki->run()
#23 {main}