Difference between revisions of "Malverso Week 12"
From LMU BioDB 2015
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*I was added as a developer of the XMLPipeDB project on GitHub under the organization lmu-bioinformatics and under the team name Heavy Metal HaterZ. | *I was added as a developer of the XMLPipeDB project on GitHub under the organization lmu-bioinformatics and under the team name Heavy Metal HaterZ. | ||
*I created a GitHub branch of xmlpipedb for your team called s-oneidensis. | *I created a GitHub branch of xmlpipedb for your team called s-oneidensis. | ||
− | + | *I downloaded eclipse for Java Developers from this [https://eclipse.org/downloads/download.php?file=/technology/epp/downloads/release/mars/1/eclipse-java-mars-1-win32-x86_64.zip link] and then extracted it using 7-zip. | |
− | * | + | *I downloaded git for windows from this [https://git-for-windows.github.io/ link]. |
− | * | + | *I saved both of these files in the T drive of the computer (Second row from the front, third away from the door). |
+ | ==Milestone 2== | ||
+ | * I saved the [https://github.com/lmu-bioinformatics/xmlpipedb XMLPipeDB GitHub repository] in the T drive and opened the git-bash.exe file which is in ThawSpace0 > Git. | ||
+ | * I cloned the repository by executing this command:<pre>git clone https://github.com/lmu-bioinformatics/xmlpipedb.git</pre> | ||
+ | * I used the <code>cd</code> command to go into the clone folder <code>xmlpipedb</code>:<pre>cd xmlpipedb</pre> | ||
+ | * Next I switched to my branch using the command:<pre>git checkout s-oneidensis</pre> | ||
+ | === Eclipse Workspace Setup === | ||
+ | * Next I ran Eclipse. | ||
+ | * When Eclipse asked me to select a workspace, I clicked the ''Browse…'' and navigated to your repository clone folder, which was T:/Git/xmlpipedb. | ||
+ | *I clicked the ''Workbench'' button (upper-right corner, with a 3D arrow for an icon). | ||
+ | === Java Project Setup === | ||
+ | * I right-clicked within the empty ''Project Explorer'' tab and chose '''New > Project…''' from the menu that appeared. | ||
+ | * I chose ''Java Project'' from the list of “wizards” and clicked on the ''Next >'' button. | ||
+ | * On the next panel, I entered <code>gmbuilder</code> as the ''Project name''. | ||
+ | * I verified that the ''JRE'' section shows Java 1.8. | ||
+ | * i clicked on the ''Finish'' button. | ||
+ | |||
+ | ===Initial Build=== | ||
+ | * I opened the ''gmbuilder'' project by clicking on the gray triangle to the left of its name. | ||
+ | *I right-clicked on ''build.xml'' and chose '''Run As > 2 Ant Build...''' | ||
+ | * In the ''Edit Configuration'' dialog that appears, I unchecked ''dist''. | ||
+ | * Next I checked on the ''clean'' and ''dist'' items in the ''Targets'' tab. The ''Target execution order'' section near the bottom of the dialog said ''clean, dist''. | ||
+ | * I clicked the ''Run'' button. | ||
+ | * When it finished, I right-clicked on the ''gmbuilder'' project folder and chose '''Refresh''' from the menu that appears. | ||
+ | *There was a ''dist'' folder appear inside the ''gmbuilder'' project folder. | ||
+ | * This is my personally-built copy of ''GenMAPP Builder''. | ||
{{Template:Malverso}} | {{Template:Malverso}} |
Latest revision as of 00:26, 20 November 2015
Contents
Milestone 1
- I was added as a developer of the XMLPipeDB project on GitHub under the organization lmu-bioinformatics and under the team name Heavy Metal HaterZ.
- I created a GitHub branch of xmlpipedb for your team called s-oneidensis.
- I downloaded eclipse for Java Developers from this link and then extracted it using 7-zip.
- I downloaded git for windows from this link.
- I saved both of these files in the T drive of the computer (Second row from the front, third away from the door).
Milestone 2
- I saved the XMLPipeDB GitHub repository in the T drive and opened the git-bash.exe file which is in ThawSpace0 > Git.
- I cloned the repository by executing this command:
git clone https://github.com/lmu-bioinformatics/xmlpipedb.git
- I used the
cd
command to go into the clone folderxmlpipedb
:cd xmlpipedb
- Next I switched to my branch using the command:
git checkout s-oneidensis
Eclipse Workspace Setup
- Next I ran Eclipse.
- When Eclipse asked me to select a workspace, I clicked the Browse… and navigated to your repository clone folder, which was T:/Git/xmlpipedb.
- I clicked the Workbench button (upper-right corner, with a 3D arrow for an icon).
Java Project Setup
- I right-clicked within the empty Project Explorer tab and chose New > Project… from the menu that appeared.
- I chose Java Project from the list of “wizards” and clicked on the Next > button.
- On the next panel, I entered
gmbuilder
as the Project name. - I verified that the JRE section shows Java 1.8.
- i clicked on the Finish button.
Initial Build
- I opened the gmbuilder project by clicking on the gray triangle to the left of its name.
- I right-clicked on build.xml and chose Run As > 2 Ant Build...
- In the Edit Configuration dialog that appears, I unchecked dist.
- Next I checked on the clean and dist items in the Targets tab. The Target execution order section near the bottom of the dialog said clean, dist.
- I clicked the Run button.
- When it finished, I right-clicked on the gmbuilder project folder and chose Refresh from the menu that appears.
- There was a dist folder appear inside the gmbuilder project folder.
- This is my personally-built copy of GenMAPP Builder.
Team Page
Assignments
- Week 1
- Week 2
- Week 3
- Week 4
- Week 5
- Week 6
- Week 7
- Week 8
- Week 9
- Week 10
- Week 11
- Week 12
- Week 13
- Week 14
- Week 15
Individual Journal Entries
- Malverso User Page (Week 1)
- Week 2
- Week 3
- Week 4
- Week 5
- Week 6
- Week 7
- Week 8
- Week 9
- Week 10
- Week 11
- Week 12
- Week 13
- Week 14
- Week 15