|
|
| | + | ==Important Information Regarding J2315== |
| | + | Sourced from the [http://www.uniprot.org/taxonomy/216591 UniProt Taxonomy entry for J2315] |
| | + | *Names: Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610), Burkholderia cepacia strain J2315 |
| | + | *TAXON ID: 216591 |
| | ==Initial Export/Import Cycle== | | ==Initial Export/Import Cycle== |
| | ===Initial Preparations=== | | ===Initial Preparations=== |
|
|
| | *The result was clicked upon and, on the result page, ''UniProtKB'' was clicked upon in the "Map to" section (on left of the page) | | *The result was clicked upon and, on the result page, ''UniProtKB'' was clicked upon in the "Map to" section (on left of the page) |
| | *On the ''UniProtKB results'' page, Download was clicked; in the box that appeared, download all was selected, the format was set to XML, and the file was set to be compressed. | | *On the ''UniProtKB results'' page, Download was clicked; in the box that appeared, download all was selected, the format was set to XML, and the file was set to be compressed. |
| − | **Referencing the entry name that corresponds to J2315, it was noticed that J2315 is also known as: ATCC BAA-245, DSM 16553, LMG 16656, NCTC 13227, and CF5610
| |
| | | | |
| | ===Retrieving the GOA file, Performed on 11/19=== | | ===Retrieving the GOA file, Performed on 11/19=== |
| | *The [http://ftp.ebi.ac.uk/pub/databases/GO/goa/ UniProt-GOA ftp site] was entered | | *The [http://ftp.ebi.ac.uk/pub/databases/GO/goa/ UniProt-GOA ftp site] was entered |
| | *The link to the "proteomes" directory was clicked in the main directory | | *The link to the "proteomes" directory was clicked in the main directory |
Exception encountered, of type "Error"
[a4064720] /biodb/fall2015/index.php?diff=6886&oldid=6555&title=Blitvak_Week_12 Error from line 434 of /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php: Call to undefined function each()
Backtrace:
#0 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(544): DiffEngine->diag()
#1 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(344): DiffEngine->compareSeq()
#2 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(227): DiffEngine->diffLocal()
#3 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(721): DiffEngine->diff()
#4 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(859): Diff->__construct()
#5 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(980): MappedDiff->__construct()
#6 /apps/xmlpipedb/biodb/fall2015/includes/diff/TableDiffFormatter.php(194): WordLevelDiff->__construct()
#7 /apps/xmlpipedb/biodb/fall2015/includes/diff/DiffFormatter.php(140): TableDiffFormatter->changed()
#8 /apps/xmlpipedb/biodb/fall2015/includes/diff/DiffFormatter.php(111): DiffFormatter->block()
#9 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(888): DiffFormatter->format()
#10 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(802): DifferenceEngine->generateTextDiffBody()
#11 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(733): DifferenceEngine->generateContentDiffBody()
#12 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(662): DifferenceEngine->getDiffBody()
#13 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(632): DifferenceEngine->getDiff()
#14 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(453): DifferenceEngine->showDiff()
#15 /apps/xmlpipedb/biodb/fall2015/includes/page/Article.php(795): DifferenceEngine->showDiffPage()
#16 /apps/xmlpipedb/biodb/fall2015/includes/page/Article.php(506): Article->showDiffPage()
#17 /apps/xmlpipedb/biodb/fall2015/includes/actions/ViewAction.php(44): Article->view()
#18 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(395): ViewAction->show()
#19 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(273): MediaWiki->performAction()
#20 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(566): MediaWiki->performRequest()
#21 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(414): MediaWiki->main()
#22 /apps/xmlpipedb/biodb/fall2015/index.php(44): MediaWiki->run()
#23 {main}