Difference between revisions of "Troque Week 15"

From LMU BioDB 2015
Jump to: navigation, search
m (Export Information: Updated with all info)
m (Export Information: Added note at the end)
Line 1: Line 1:
 
{{Template:Troque}}
 
{{Template:Troque}}
  
== Export Information ==
+
== Export Information (Re-imported) ==
 
Version of GenMAPP Builder:
 
Version of GenMAPP Builder:
 
* ''' gmbuilder-3.0.0-build-5 '''
 
* ''' gmbuilder-3.0.0-build-5 '''
Line 36: Line 36:
 
** Note:
 
** Note:
  
 +
The reason why I had to re-import everything into a new database is because the one I have been using had some files imported twice. Thus, the reports given by PostGres were all twice as much.
  
 
{{Template:Troque_Journal}}
 
{{Template:Troque_Journal}}

Revision as of 10:15, 9 December 2015

User Page        Bio Databases Main Page       


Export Information (Re-imported)

Version of GenMAPP Builder:

  • gmbuilder-3.0.0-build-5

Computer on which export was run:

  • Front of the room, 3rd computer from the right.

Postgres Database name:

  • Shigella_flexneri_20151208

UniProt XML filename (give filename and upload and link to compressed file):

  • UniProt XML version (The version information can be found at the UniProt News Page): UniProt release 2015_11
  • UniProt XML download link: Click here
  • Time taken to import: 4.43 minutes
    • Note:

GO OBO-XML filename (give filename and upload and link to compressed file):

  • GO OBO-XML version (The version information can be found in the file properties after the file downloaded from the GO Download page has been unzipped): Version created on 11/19/2015 (at 2:24 AM)
  • GO OBO-XML download link: Click here to download.
  • Time taken to import: 6.84 minutes
  • Time taken to process: 5.49 minutes
    • Note:

GOA filename (give filename and upload and link to compressed file):

  • GOA version (News on this page records past releases; current information can be found in the Last modified field on the FTP site): Version released on .
  • GOA download link: Click here to download.
  • Time taken to import: 0.06 minutes
    • Note:

Name of .gdb file (give filename and upload and link to compressed file): Sf-Std 20151208.gdb

  • Time taken to export: 1 hour, 38 minutes, 42 seconds
    • Start time: 4:30:59 PM PDT
    • End time: 6:09:41 PM PDT
    • Note:

The reason why I had to re-import everything into a new database is because the one I have been using had some files imported twice. Thus, the reports given by PostGres were all twice as much.

Assignment Links

Weekly Assignments

Individual Journal Entries

Shared Journal Entries