|
|
| | * Start paper | | * Start paper |
| | |<!--Brandon--> | | |<!--Brandon--> |
| | + | * Work with Anu to fix any issues with the final gene database |
| | + | * Finish presentation |
| | + | * Prepare for presentation |
| | + | * Work on final paper |
| | + | * Conduct final checks on last export (check testing report, make any adjustments) |
| | |<!--Veronica--> | | |<!--Veronica--> |
| | ''Work with Kevin Wyllie'' | | ''Work with Kevin Wyllie'' |
| | + | * Finish example MAPPs (one for increase and decrease). |
| | + | * Create sanity check table (with P-values). |
| | + | * Upload deliverables. |
| | + | * Begin PowerPoint. |
| | + | * Begin report. |
| | |<!--Kevin--> | | |<!--Kevin--> |
| | ''Work with Veronica Pacheco'' | | ''Work with Veronica Pacheco'' |
| | + | * Finish example MAPPs (one for increase and decrease). |
| | + | * Create sanity check table (with P-values). |
| | + | * Upload deliverables. |
| | + | * Begin PowerPoint. |
| | + | * Begin report. |
| | |- | | |- |
| | !scope="row"|'''Progress''' | | !scope="row"|'''Progress''' |
| | |<!--Anu--> | | |<!--Anu--> |
| − | * Created a new build to fix problem in TallyEngine | + | * Created a new build to fix problem in TallyEngine. |
| | + | * Contributed to final presentation and practiced speaking. |
| | + | * Began drafting final report of findings from this project. |
| | + | * Created ReadMe file. |
| | + | * Modified Gene Database Schema for B. cenocepacia. |
| | |<!--Brandon--> | | |<!--Brandon--> |
| | + | * Checked final export: everything appears in order |
| | + | * Checked new build of GenMAPP builder |
| | + | * Realized why the UniProt count of 6994 is so different from the one reported by our database (difference between protein entry/gene name) |
| | + | * Finalized readme |
| | + | * Helped in finalizing the slides |
| | + | * Practiced presentation |
| | |<!--Veronica--> | | |<!--Veronica--> |
| | + | * Finished example MAPP (decided do chose one pathway, oxidative phosphorylation). |
| | + | * Created sanity check table (with P-values) |
| | + | * Uploaded deliverables |
| | + | * Began and finished PowerPoint. |
| | + | * Began report. |
| | |<!--Kevin--> | | |<!--Kevin--> |
| | + | * Finished example MAPP (decided do chose one pathway, oxidative phosphorylation). |
| | + | * Created sanity check table (with P-values) |
| | + | * Uploaded deliverables |
| | + | * Began and finished PowerPoint. |
| | + | * Began report. |
| | |- | | |- |
| | !scope="row"|'''Individual Journal Pages''' | | !scope="row"|'''Individual Journal Pages''' |
|
|
| | !scope="row"|'''Files Used/Created''' | | !scope="row"|'''Files Used/Created''' |
| | |<!--Anu--> | | |<!--Anu--> |
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Backtrace:
#0 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(544): DiffEngine->diag()
#1 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(344): DiffEngine->compareSeq()
#2 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(227): DiffEngine->diffLocal()
#3 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(721): DiffEngine->diff()
#4 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(859): Diff->__construct()
#5 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(980): MappedDiff->__construct()
#6 /apps/xmlpipedb/biodb/fall2015/includes/diff/TableDiffFormatter.php(194): WordLevelDiff->__construct()
#7 /apps/xmlpipedb/biodb/fall2015/includes/diff/DiffFormatter.php(140): TableDiffFormatter->changed()
#8 /apps/xmlpipedb/biodb/fall2015/includes/diff/DiffFormatter.php(82): DiffFormatter->block()
#9 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(888): DiffFormatter->format()
#10 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(802): DifferenceEngine->generateTextDiffBody()
#11 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(733): DifferenceEngine->generateContentDiffBody()
#12 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(662): DifferenceEngine->getDiffBody()
#13 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(632): DifferenceEngine->getDiff()
#14 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(453): DifferenceEngine->showDiff()
#15 /apps/xmlpipedb/biodb/fall2015/includes/page/Article.php(795): DifferenceEngine->showDiffPage()
#16 /apps/xmlpipedb/biodb/fall2015/includes/page/Article.php(506): Article->showDiffPage()
#17 /apps/xmlpipedb/biodb/fall2015/includes/actions/ViewAction.php(44): Article->view()
#18 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(395): ViewAction->show()
#19 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(273): MediaWiki->performAction()
#20 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(566): MediaWiki->performRequest()
#21 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(414): MediaWiki->main()
#22 /apps/xmlpipedb/biodb/fall2015/index.php(44): MediaWiki->run()
#23 {main}