|
|
| | * Start paper | | * Start paper |
| | |<!--Brandon--> | | |<!--Brandon--> |
| | + | * Work with Anu to fix any issues with the final gene database |
| | + | * Finish presentation |
| | + | * Prepare for presentation |
| | + | * Work on final paper |
| | + | * Conduct final checks on last export (check testing report, make any adjustments) |
| | |<!--Veronica--> | | |<!--Veronica--> |
| | ''Work with Kevin Wyllie'' | | ''Work with Kevin Wyllie'' |
| | + | * Finish example MAPPs (one for increase and decrease). |
| | + | * Create sanity check table (with P-values). |
| | + | * Upload deliverables. |
| | + | * Begin PowerPoint. |
| | + | * Begin report. |
| | |<!--Kevin--> | | |<!--Kevin--> |
| | ''Work with Veronica Pacheco'' | | ''Work with Veronica Pacheco'' |
| | + | * Finish example MAPPs (one for increase and decrease). |
| | + | * Create sanity check table (with P-values). |
| | + | * Upload deliverables. |
| | + | * Begin PowerPoint. |
| | + | * Begin report. |
| | |- | | |- |
| | !scope="row"|'''Progress''' | | !scope="row"|'''Progress''' |
| | |<!--Anu--> | | |<!--Anu--> |
| − | * Created a new build to fix problem in TallyEngine | + | * Created a new build to fix problem in TallyEngine. |
| | + | * Contributed to final presentation and practiced speaking. |
| | + | * Began drafting final report of findings from this project. |
| | + | * Created ReadMe file. |
| | + | * Modified Gene Database Schema for B. cenocepacia. |
| | |<!--Brandon--> | | |<!--Brandon--> |
| | + | * Checked final export: everything appears in order |
| | + | * Checked new build of GenMAPP builder |
| | + | * Realized why the UniProt count of 6994 is so different from the one reported by our database (difference between protein entry/gene name) |
| | + | * Finalized readme |
| | + | * Helped in finalizing the slides |
| | + | * Practiced presentation |
| | |<!--Veronica--> | | |<!--Veronica--> |
| | + | * Finished example MAPP (decided do chose one pathway, oxidative phosphorylation). |
| | + | * Created sanity check table (with P-values) |
| | + | * Uploaded deliverables |
| | + | * Began and finished PowerPoint. |
| | + | * Began report. |
| | |<!--Kevin--> | | |<!--Kevin--> |
| | + | * Finished example MAPP (decided do chose one pathway, oxidative phosphorylation). |
| | + | * Created sanity check table (with P-values) |
| | + | * Uploaded deliverables |
| | + | * Began and finished PowerPoint. |
| | + | * Began report. |
| | |- | | |- |
| | !scope="row"|'''Individual Journal Pages''' | | !scope="row"|'''Individual Journal Pages''' |
|
|
| | !scope="row"|'''Files Used/Created''' | | !scope="row"|'''Files Used/Created''' |
| | |<!--Anu--> | | |<!--Anu--> |
| − | [[Media:ReadMe_Bc-Std_GEN_Build4_20151204.doc.zip | readMe_Bc-Std_GEN_Build4_20151204.doc.zip]] <br> | + | *[[Media:ReadMe_Bc-Std_GEN_Build4_20151204.doc.zip | readMe_Bc-Std_GEN_Build4_20151204.doc.zip]] <br> |
| − | [[Media:gmbuilder-genialomics-20151210-build-5.zip | gmbuilder-genialomics-20151210-build-5.zip]] | + | *[[Media:gmbuilder-genialomics-20151210-build-5.zip | gmbuilder-genialomics-20151210-build-5.zip]]<br> |
| | + | *[[Media:Genialomics-DatabaseSchema-20151211.pdf | Genialomics-DatabaseSchema-20151211.pdf]] |
| | + | *[[Media:BioDB_Final_Presentation_GEN_20151214.pdf| Final Presentation Slides (.pdf)]] |
| | |<!--Brandon--> | | |<!--Brandon--> |
| | + | *[[Media:ReadMe Bc-Std GEN Build4 20151214 final.pdf| Final Readme]] |
| | + | *[[Media:GÉNialOMICS Gene Database Testing Report (Build 4 Export) - LMU BioDB 2015.pdf| Final Testing Report, as PDF]] |
| | + | *[[Media:BioDB_Final_Presentation_GEN_20151214.pdf| Final Presentation Slides (.pdf)]] |
| | |<!--Veronica--> | | |<!--Veronica--> |
| | + | *[[Media:BioDB_Final_Presentation_GEN_20151214.pdf| Final Presentation Slides (.pdf)]] |
| | + | *[[Media:Oxphosmappkwvp20151212.mapp| MAPP ]] |
| | |<!--Kevin--> | | |<!--Kevin--> |
| | + | * Generated sanity check table. |
| | + | * Upload deliverables. |
| | + | *[[Media:BioDB_Final_Presentation_GEN_20151214.pdf| Final Presentation Slides (.pdf)]] |
| | + | *[[Media:Oxphosmappkwvp20151212.mapp| MAPP]] |
| | |} | | |} |
| | | | |
| | ==Other Progress== | | ==Other Progress== |
| | + | * On December 14, 2015, GENialOMICS completed a presentation summarizing their methods and findings. |
| | + | ** [[Media:Genialomics-BioDBFinalPresentation.pdf | GENialOMICS Final Presentation]] |
| | | | |
| | =Deliverables= | | =Deliverables= |
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#1 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(344): DiffEngine->compareSeq()
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