* On your individual journal entry pages, you will keep an electronic lab notebook that details how you conducted your search, along with the results of your search.

* On your individual journal entry pages, you will keep an electronic lab notebook that details how you conducted your search, along with the results of your search.

* On your team page (see shared assignment below), you will combine your results with your teammates into one final, ranked bibliography.  Specifically, you need to search the literature/biological databases for the following:

* On your team page (see shared assignment below), you will combine your results with your teammates into one final, ranked bibliography.  Specifically, you need to search the literature/biological databases for the following:

*# The journal article which describes the results of the whole genome sequencing for your species.  ''(Note that you will be giving a journal club presentation on this article for your [[Week 11]] assignment.)''

*# The journal article which describes the results of the whole genome sequencing for your species.  ''(Note that you will be giving a journal club presentation on this article for your [[Week 11]] assignment.)'' <!--emphasize that there might be multiple papers for different strains or clinical isolates, but that they are trying to find the one for the main model that is used experimentally, typically the first paper to sequence that species.-->

*#* Use a keyword search for each of these databases/tools and answer the following:   

*#* Use a keyword search for each of these databases/tools and answer the following:   

*#** '''PubMed'''

*#** '''PubMed'''

*#*** Which advanced search functions were most useful to narrow down the search?  How many results did you get?

*#*** Which advanced search functions were most useful to narrow down the search?  How many results did you get?

*#** '''Web of Science'''

*#** '''Web of Science'''

*#*** Which advanced search functions were most useful to narrow down the search?  How many results did you get?

*#*** Which advanced search functions were most useful to narrow down the search?  How many results did you get? <!--ask them to be more explicit in comparing and contrasting results from 3 search engines and make a determination of what they would do in the future; more metacognitive and reflective on experience.-->

*#* Each of the references in your bibliography needs to have the following information (an example is given in another section below):

*#* Each of the references in your bibliography needs to have the following information (an example is given in another section below):

*#** The complete bibliographic reference in the APA style (see the [http://libguides.lmu.edu/c.php?g=324079&p=2174128 Writing LibGuide])  You will be using one of three formats, “journal article from database (with DOI), journal article from database (no DOI) or journal article in print (no DOI).)

*#** The complete bibliographic reference in the APA style (see the [http://libguides.lmu.edu/c.php?g=324079&p=2174128 Writing LibGuide])  You will be using one of three formats, “journal article from database (with DOI), journal article from database (no DOI) or journal article in print (no DOI).)<!--note that if copying and pasting from GoogleScholar "cite" function, you will lose italics and need to format them on the wiki with the appropriate syntax-->

*#** The link to the abstract from  [http://www.ncbi.nlm.nih.gov/pubmed PubMed].

*#** The link to the abstract from  [http://www.ncbi.nlm.nih.gov/pubmed PubMed].

*#** The link to the full text of the article in [http://www.ncbi.nlm.nih.gov/pmc/ PubMedCentral].

*#** The link to the full text of the article in [http://www.ncbi.nlm.nih.gov/pmc/ PubMedCentral].

*#** The link to the full text of the article (HTML format) from the publisher web site.

*#** The link to the full text of the article (HTML format) from the publisher web site. <!--need to explain what this means, because some confusion-->

*#** The link to the full PDF version of the article from the publisher web site.

*#** The link to the full PDF version of the article from the publisher web site.

*#** Who owns the rights to the article?

*#** Who owns the rights to the article?

*#*** Does the journal own the copyright?

*#*** Does the journal own the copyright?

*#*** Do the authors own the copyright?

*#*** Do the authors own the copyright?

*#*** Do the authors own the rights under a [http://creativecommons.org/ Creative Commons] license?

*#*** Do the authors own the rights under a [http://creativecommons.org/ Creative Commons] license? <!--maybe rephrase this as license to redistribute-->

*#*** Is the article available “Open Access”?

*#*** Is the article available “Open Access”?

*#** What organization is the publisher of the article?  What type of organization is it?  (commercial, for-profit publisher, scientific society, respected open access organization like [http://www.plos.org/ Public Library of Science] or [http://www.plos.org/ BioMedCentral], or predatory open access organization, see the list of) [http://oaspa.org/membership/members/ (Open Access Scholarly Publishers Association Members) here.]

*#** What organization is the publisher of the article?  What type of organization is it?  (commercial, for-profit publisher, scientific society, respected open access organization like [http://www.plos.org/ Public Library of Science] or [http://www.plos.org/ BioMedCentral], or predatory open access organization, see the list of) [http://oaspa.org/membership/members/ (Open Access Scholarly Publishers Association Members) here.]