Difference between revisions of "Kzebrows Individual Reflection"
From LMU BioDB 2015
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| + | === Statement of Work === | ||
| + | In this project I acted as a GenMAPP User and as the Project Manager for the Oregon Trail Survivors. With the group, I helped to locate an appropriate genome and microarray paper for the project and presented on the microarray paper with Erich. I downloaded and created a compiled raw data file with Erich (I did RX samples and he did RP) and normalized log ratios and performed statistical analysis for my half of the data set. I communicated any errors or bugs with the QA and Coder as well as Dr. Dahlquist. I also performed a sanity check on my data and prepared the file for GenMAPP, which I then combined with Erich’s RP data file to create a master file. I created 12 color sets (one for each treatment) and ran the data through MAPPFinder, creating Criterion-Go.txt files that I then filtered and analyzed with Erich in order to compare with the MAPPs he created. I also helped write the final paper and presentation regarding my contributions to the project. | ||
| + | |||
| + | As Project Manager, I made sure that each team member completed their weekly status updates and checked in with them regularly regarding what they were working on. I also cleaned up the team Wiki and Deliverables pages and met with Dr. Dahlquist and Dr. Dionisio as part of the Project Managers guild to give team updates. | ||
| + | |||
| + | |||
| + | Files I contributed to: | ||
| + | *[[Media:Shigellamicroarray.pptx | Microarray Journal Club Power Point]] | ||
| + | *[[Media:CompiledRaw data RPRX IDLR EYKZ20152211.xlsx | Microarray Compiled Raw Data RP/RX IDLR]] | ||
| + | *[[Media:SamplesFilesCorrespondanceTable SF301a EYKZ201522111.xls | Microarray Corresponding Files Table]] | ||
| + | *[[Media:FINAL CompiledRawData RXRP EYKZ20151210.xlsx | Compiled Raw Microarray Dataset (.xlsx)]] | ||
| + | *[[Media:FINAL CompiledRawData RXRP EYKZ20151210.txt | Data Used for Import into GenMAPP (.txt)]] | ||
| + | *[[Media:FINAL CompiledRawData RXRP EYKZ20151210 (1).gex | GenMAPP Expression Dataset File (.gex)]] | ||
| + | *[[Media:FINAL CompiledRawData RXRP EYKZ20151210.EX.txt | Exceptions file (.EX.txt)]] | ||
| + | *[[Media:Criterion.GOfiles.zip | Raw MAPPFinder results files (-GO.txt)]] | ||
| + | *[[Media:CompiledRaw data RPRX IDLR EYKZ2015126.gmf | .gmf file]] | ||
| + | *[[Media:FinalOTSPresentation.pptx | Final PowerPoint Presentation]] | ||
| + | *[[Media:CompiledRaw data RPRX IDLR EYKZ2015121.xlsx | ScalingCentering file 12/1 .xlsx]] | ||
| + | |||
| + | Files I created: | ||
| + | *[[Media:Filtered MAPPFinder Results.xlsx | Filtered MAPPFinder Results .xlsx]] | ||
| + | *[[Media:MAPPFinderResults.zip | Filtered MAPPFinder Results (common GO terms highlighted) .png]] | ||
| + | *[[Media:CompiledRaw data RPRX IDLR EYKZ2015126.xlsx | RX Compiled Raw Data 12/6]] | ||
| + | *[[Media:CompiledRaw data statistics BonferroniPvalue RP IDLR EYKZ2015126.txt | RX .txt format GenMAPP ready 12/6]] | ||
| + | *[[Media:CompiledRaw data RPRX IDLR EYKZ2015126.xlsx | RX Compiled Raw Data as of 12/6]] | ||
| + | *[[Media:CompiledRaw data RPRX IDLR EYKZ2015126.txt | RX .txt format updated as of 12/6]] | ||
| + | *[[Media:CompiledRaw data RPRX IDLR EYKZ2015126.EX.txt | RX Exceptions file]] | ||
| + | *[[Media:CompiledRaw data RPRX IDLR EYKZ2015126.gex | RX .gex file]] | ||
| + | *[[Media:CompiledRaw data RX IDLR KZ2015126.EX.xlsx | RX Exceptions file in Excel format (filtered)]] | ||
| + | |||
| + | === Assessment of Project === | ||
| + | |||
| + | * Give an objective assessment of the success of your project workflow and teamwork. | ||
| + | * What worked and what didn't work? | ||
| + | * What would you do differently if you could do it all over again? | ||
| + | * Evaluate the Gene Database Project and Group Report in the following areas: | ||
| + | *# Content: What is the quality of the work? | ||
| + | *# Organization: Comment on the organization of the project and of your group's wiki pages. | ||
| + | *# Completeness: Did your team achieve all of the project objectives? Why or why not? | ||
| + | |||
| + | === Reflection on the Process === | ||
| + | |||
| + | * What did you learn? | ||
| + | ** With your head (biological or computer science principles) | ||
| + | ** With your heart (personal qualities and teamwork qualities that make things work or not work)? | ||
| + | ** With your hands (technical skills)? | ||
| + | * What lesson will you take away from this project that you will still use a year from now? | ||
Revision as of 09:31, 18 December 2015
Statement of Work
In this project I acted as a GenMAPP User and as the Project Manager for the Oregon Trail Survivors. With the group, I helped to locate an appropriate genome and microarray paper for the project and presented on the microarray paper with Erich. I downloaded and created a compiled raw data file with Erich (I did RX samples and he did RP) and normalized log ratios and performed statistical analysis for my half of the data set. I communicated any errors or bugs with the QA and Coder as well as Dr. Dahlquist. I also performed a sanity check on my data and prepared the file for GenMAPP, which I then combined with Erich’s RP data file to create a master file. I created 12 color sets (one for each treatment) and ran the data through MAPPFinder, creating Criterion-Go.txt files that I then filtered and analyzed with Erich in order to compare with the MAPPs he created. I also helped write the final paper and presentation regarding my contributions to the project.
As Project Manager, I made sure that each team member completed their weekly status updates and checked in with them regularly regarding what they were working on. I also cleaned up the team Wiki and Deliverables pages and met with Dr. Dahlquist and Dr. Dionisio as part of the Project Managers guild to give team updates.
Files I contributed to:
- Microarray Journal Club Power Point
- Microarray Compiled Raw Data RP/RX IDLR
- Microarray Corresponding Files Table
- Compiled Raw Microarray Dataset (.xlsx)
- Data Used for Import into GenMAPP (.txt)
- GenMAPP Expression Dataset File (.gex)
- Exceptions file (.EX.txt)
- Raw MAPPFinder results files (-GO.txt)
- .gmf file
- Final PowerPoint Presentation
- ScalingCentering file 12/1 .xlsx
Files I created:
- Filtered MAPPFinder Results .xlsx
- Filtered MAPPFinder Results (common GO terms highlighted) .png
- RX Compiled Raw Data 12/6
- RX .txt format GenMAPP ready 12/6
- RX Compiled Raw Data as of 12/6
- RX .txt format updated as of 12/6
- RX Exceptions file
- RX .gex file
- RX Exceptions file in Excel format (filtered)
Assessment of Project
- Give an objective assessment of the success of your project workflow and teamwork.
- What worked and what didn't work?
- What would you do differently if you could do it all over again?
- Evaluate the Gene Database Project and Group Report in the following areas:
- Content: What is the quality of the work?
- Organization: Comment on the organization of the project and of your group's wiki pages.
- Completeness: Did your team achieve all of the project objectives? Why or why not?
Reflection on the Process
- What did you learn?
- With your head (biological or computer science principles)
- With your heart (personal qualities and teamwork qualities that make things work or not work)?
- With your hands (technical skills)?
- What lesson will you take away from this project that you will still use a year from now?
