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| | {{Template:Troque}} | | {{Template:Troque}} |
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| − | == Source == | + | == Sources == |
| − | * The methods described in this page are taken from this [http://www.openwetware.org/wiki/BIOL398-01/S10:Sample_Microarray_Analysis_Vibrio_cholerae openwetware page]. | + | * The methods described in Part 1 of this page are taken from this [http://www.openwetware.org/wiki/BIOL398-01/S10:Sample_Microarray_Analysis_Vibrio_cholerae openwetware page]. |
| | + | * The methods for Part 2 have been adapted from this [http://www.openwetware.org/wiki/BIOL367/F10:GenMAPP_and_MAPPFinder_Protocols page]. |
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| − | == Excel Files == | + | == Files created == |
| | * '''The Excel file created on Thursday (October 15, 2015) can be downloaded [[Media:Merrell Compiled Raw Data Vibrio TR 20151015.xls | here]].''' | | * '''The Excel file created on Thursday (October 15, 2015) can be downloaded [[Media:Merrell Compiled Raw Data Vibrio TR 20151015.xls | here]].''' |
| | * '''A more updated Excel file with the B-H p-value correction can be downloaded [[Media:Merrell Compiled Raw Data Vibrio TR 20151019.xls | here]].''' | | * '''A more updated Excel file with the B-H p-value correction can be downloaded [[Media:Merrell Compiled Raw Data Vibrio TR 20151019.xls | here]].''' |
| | * '''The tab delimited txt file can be seen [[Media:Merrell Compiled Raw Data Vibrio TR 20151019.txt | here]] | | * '''The tab delimited txt file can be seen [[Media:Merrell Compiled Raw Data Vibrio TR 20151019.txt | here]] |
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| − | == Things to remember == | + | == Things to note == |
| | * Always save your work when you have a chance. | | * Always save your work when you have a chance. |
| | + | * For this assignment, my partner was Erich Yanoschik. |
| | + | * For Part 2, I worked on the 2009 data while Erich worked on the 2010 data. |
| | + | * On Thursday (October 22), we were assigned to analyze decreased expressions of our data using GenMAPP. |
| | + | * I met with Erich on Monday (October 26) to work on this assignment. |
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| | == Part 1 == | | == Part 1 == |
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| | To scale and center the data (between chip normalization) I performed the following operations: | | To scale and center the data (between chip normalization) I performed the following operations: |
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