Difference between revisions of "OTS Deliverables"
From LMU BioDB 2015
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| + | {{Template:Oregon Trail Survivors}} | ||
| + | ==OTS Group Files and Datasets== | ||
| + | |||
| + | [[Media:GenMAPP Builder 12 14 2015 Number 2.zip | Gene Database .gdb]] | ||
| + | |||
| + | [[Media:ReadMe Sf-Std External 20151214.pdf | ReadMe]] | ||
| + | |||
| + | [[Media:ShigellaGeneDatabaseSchema.pdf | Gene Database Schema]] | ||
| + | |||
| + | [[Media:Gene Database Testing Report for Shigella flexneri 2a str 301.pdf | Gene Database Testing Report (.pdf)]] | ||
| + | |||
| + | [[Media:FINAL CompiledRawData RXRP EYKZ20151210.xlsx | Compiled Raw Microarray Dataset (.xlsx)]] | ||
| + | |||
| + | [[Media:FINAL CompiledRawData RXRP EYKZ20151210.txt | Data Used for Import into GenMAPP (.txt)]] | ||
| + | |||
| + | [[Media:FINAL CompiledRawData RXRP EYKZ20151210 (1).gex | GenMAPP Expression Dataset File (.gex)]] | ||
| + | |||
| + | [[Media:FINAL CompiledRawData RXRP EYKZ20151210.EX.txt | Exceptions file (.EX.txt)]] | ||
| + | |||
| + | [[Media:Criterion.GOfiles.zip | Raw MAPPFinder results files (-GO.txt)]] | ||
| + | |||
| + | [[Media:CompiledRaw data RPRX IDLR EYKZ2015126.gmf | .gmf file]] | ||
| + | |||
| + | [[Media:Filtered MAPPFinder Results.xlsx | Filtered MAPPFinder Results .xlsx]] | ||
| + | |||
| + | [[Media:MAPPFinderResults.zip | Filtered MAPPFinder Results (common GO terms highlighted) .png]] | ||
| + | |||
| + | [[Media:RPRX MAPPs.zip | .zip of .mapp s of relevant genes]] | ||
| + | |||
| + | [[Media:OTSDeliverables.docx | Final Group Report .docx]] | ||
| + | |||
| + | [[Media:FinalOTSPresentation.pptx | Final PowerPoint Presentation]] | ||
| + | |||
| + | ==Individual Reflections== | ||
| + | |||
| + | [[Kzebrows Individual Reflection | Kristin Zebrowski]] | ||
| + | |||
| + | [[Eyanosch Individual Reflection | Erich Yanoschik]] | ||
| + | |||
| + | [[Jwoodlee Individual Reflection | Jake Woodlee]] | ||
| + | |||
| + | [[Media:Final Project Reflection OTS TR 20151218.pdf | Trixie Roque]] | ||
| + | <!-- | ||
==OTS Files== | ==OTS Files== | ||
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[[Media: GMBuilder Shigella flexneri.zip]] | [[Media: GMBuilder Shigella flexneri.zip]] | ||
| − | + | [[Media: QA Files.zip | Download QA files]] | |
| + | |||
| + | [[Media:GMBuilder December7 2015 build 2.zip]] | ||
| + | |||
| + | [[Media:GenMAPP Builder 12 14 2015.zip]] | ||
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| + | |||
| + | |||
| + | ==GenMAPP User Files== | ||
| + | [[Media:CompiledRaw data RPRX IDLR EYKZ2015121.xlsx | ScalingCentering file 12/1 .xlsx]] | ||
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| + | |||
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| + | [[Media:Flagellum Ribosomal Mapp 1 60min 20151012.jpg | RP vs RX 1 MIC @ 60 minutes MAPP 12/12 .jpg]] | ||
| + | |||
| + | [[Media:Flagellum Ribosomal Mapp 0pt5 10min 20151012.jpg | RP vs RX 0.5 MIC @ 10 minutes MAPP 12/12 .jpg]] | ||
| + | |||
| + | |||
| + | ====RP (Erich)==== | ||
| + | [[Media:CompiledRaw data GenMAPP Final RP IDLR EYKZ2015126.xlsx | RP Compiled Raw Data Final 12/10]] | ||
| + | |||
| + | [[Media:CompiledRaw data GenMAPP ready RP IDLR EYKZ2015126.txt | RP .txt format GenMAPP ready 12/6]] | ||
| + | |||
| + | [[Media:CompiledRaw data Errors RP EYKZ2015126.EX.xlsx | RP Exceptions file in Excel format (filtered)]] | ||
| + | |||
| + | [[Media:CompiledRaw data Errors RP EYKZ2015126.EX.txt | RP Exceptions (txt)]] | ||
| + | |||
| + | [[Media:CompiledRaw data GenMAPP ready RP IDLR EYKZ2015126.gex | RP .gex file]] | ||
| + | |||
| + | ====RX (Kristin)==== | ||
| + | [[Media:CompiledRaw data RPRX IDLR EYKZ2015126.xlsx | RX Compiled Raw Data 12/6]] | ||
| + | |||
| + | [[Media:CompiledRaw data statistics BonferroniPvalue RP IDLR EYKZ2015126.txt | RX .txt format GenMAPP ready 12/6]] | ||
| + | |||
| + | [[Media:CompiledRaw data RPRX IDLR EYKZ2015126.xlsx | RX Compiled Raw Data as of 12/6]] | ||
| + | |||
| + | [[Media:CompiledRaw data RPRX IDLR EYKZ2015126.txt | RX .txt format updated as of 12/6]] | ||
| + | |||
| + | [[Media:CompiledRaw data RPRX IDLR EYKZ2015126.EX.txt | RX Exceptions file]] | ||
| + | |||
| + | [[Media:CompiledRaw data RPRX IDLR EYKZ2015126.gex | RX .gex file]] | ||
| + | |||
| + | [[Media:CompiledRaw data RX IDLR KZ2015126.EX.xlsx | RX Exceptions file in Excel format (filtered)]] | ||
| + | |||
| + | --> | ||
Latest revision as of 00:23, 19 December 2015
Helpful Links
| Team Links | |||||
|---|---|---|---|---|---|
| Files | Team Members | Week 11 Assignment | Week 12 Assignment | Week 14 Assignment | Week 15 Assignment |
| OTS Deliverables | Trixie | Week 11 | Week 12 | Week 14 | Week 15 |
| Jake | Week 11 | Week 12 | Week 14 | Week 15 | |
| Gene Database Testing Report | Erich | Week 11 | Week 12 | Week 14 | Week 15 |
| Kristin | Week 11 | Week 12 | Week 14 | Week 15 | |
| Gene Database Project Links | |||||||
|---|---|---|---|---|---|---|---|
| Overview | Deliverables | Reference Format | Guilds | Project Manager | GenMAPP User | Quality Assurance | Coder |
| Teams | Heavy Metal HaterZ | The Class Whoopers | GÉNialOMICS | Oregon Trail Survivors | |||
OTS Group Files and Datasets
Gene Database Testing Report (.pdf)
Compiled Raw Microarray Dataset (.xlsx)
Data Used for Import into GenMAPP (.txt)
GenMAPP Expression Dataset File (.gex)
Raw MAPPFinder results files (-GO.txt)
Filtered MAPPFinder Results .xlsx
Filtered MAPPFinder Results (common GO terms highlighted) .png
.zip of .mapp s of relevant genes
Individual Reflections
