Difference between revisions of "Heavy Metal HaterZ Deliverables"
From LMU BioDB 2015
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{{Template:Heavy Metal HaterZ}} | {{Template:Heavy Metal HaterZ}} | ||
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| + | == Individual Assessments and Reflections == | ||
| + | [[Malverso Assessments & Reflections]] | ||
| + | |||
| + | [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/Emilysimso_Week_15#Statement_of_Work Emily Simso (on Week 15 Assignment Page)] | ||
== Group Files and Datasets == | == Group Files and Datasets == | ||
| − | * [[Media:So- | + | * [[Media:So-Std_HMH_20151214.zip | GenMAPP Gene Database for assigned species]] |
* ReadMe file to accompany the Gene Database (''.pdf'') | * ReadMe file to accompany the Gene Database (''.pdf'') | ||
| − | ** | + | ** [[Media:ReadMe So-Std 20151214.pdf | Shewanella onedensis ReadMe]] |
| − | + | ||
| − | + | ||
* [[Media:Gene Database Testing Report - Heavy Metal HaterZ.pdf | Gene Database Testing Report]] for final submitted Gene Database | * [[Media:Gene Database Testing Report - Heavy Metal HaterZ.pdf | Gene Database Testing Report]] for final submitted Gene Database | ||
* Processed and analyzed DNA microarray dataset (''.xls'' or ''.xlsx'') | * Processed and analyzed DNA microarray dataset (''.xls'' or ''.xlsx'') | ||
| + | **[[File:UpdatedCompiledRawData WithGenMAPP 20151210 ES HMH.xlsx]] | ||
* [[Media:CompiledRawData ForGenMAPP 20151208 HMH.txt | Data file]] used for import into GenMAPP | * [[Media:CompiledRawData ForGenMAPP 20151208 HMH.txt | Data file]] used for import into GenMAPP | ||
| − | * [[Media:CompiledRawData ForGenMAPP 20151210 HMH. | + | * [[Media:CompiledRawData ForGenMAPP 20151210 HMH.gex | GenMAPP Expression Dataset file]] |
| − | * Exceptions file of data imported into GenMAPP | + | * [[Media:CompiledRawData ForGenMAPP 20151210 HMH.EX.txt | Exceptions file]] of data imported into GenMAPP |
| − | * Raw MAPPFinder results files | + | * Raw MAPPFinder results files: |
| − | * ''.gmf'' file | + | ** [[Media:MAPPFINDER 20151212-Criterion0-GO.txt | criterion 0]] |
| + | ** [[Media:MAPPFINDER 20151212-Criterion1-GO.txt | criterion 1]] | ||
| + | * [[Media:CompiledRawData ForGenMAPP 20151210 HMH.zip | ''.gmf'' file]] | ||
* Filtered MAPPFinder Results (''.xls'' or ''.xlsx'') | * Filtered MAPPFinder Results (''.xls'' or ''.xlsx'') | ||
| + | **[[Media:MAPPFINDER 20151212-Criterion0-GO.xlsx | criterion 0]] | ||
| + | **[[Media:MAPPFINDER 20151212-Criterion1-GO 20151212 HMH.xlsx | criterion 1]] | ||
* Sample MAPP file of a relevant biological pathway for your species (''.mapp'') | * Sample MAPP file of a relevant biological pathway for your species (''.mapp'') | ||
| − | * [[ | + | **[[File:Fatty Acid Degradation Soneidensis 20151213 HMH.mapp | Fatty Acid Degradation]] |
| − | * | + | **[[File:Compiled Fatty Acid Degradation 20151216 HMH.mapp | Compiled Fatty Acid Degradation]] |
| + | **[[File:Ribosomal Soneidensis 20151213 HMH.mapp | Ribosome]] | ||
| + | **[[File:Compiled Ribosome 20151216 HMH.mapp | Compiled Ribosome]] | ||
| + | ===Final Report and Presentation=== | ||
| + | * [[File:Final_Report_20151218_2_HMH.docx | Final Group Report]] | ||
| + | * [[Media:Biol Data Final Presentation.pdf | PowerPoint presentation]] given on Tuesday, December 15 | ||
[[Gene Database Project Deliverables]] | [[Gene Database Project Deliverables]] | ||
[[Category:Heavy Metal HaterZ]] | [[Category:Heavy Metal HaterZ]] | ||
[[Category:Group Projects]] | [[Category:Group Projects]] | ||
Latest revision as of 22:46, 18 December 2015
Contents
Shewanella oneidensis
Our Gene Database Testing Report
Group Paper - File:Final Report 20151218 2 HMH.docx
Group Members
- Coder: Mary Alverson
- GenMAPP User & Project Manager: Ron Legaspi
- Quality Assurance: Josh Kuroda
- GenMAPP User: Emily Simso
Important Links
Our Files
Our Deliverables
| Gene Database Project Links | |||||||
|---|---|---|---|---|---|---|---|
| Overview | Deliverables | Reference Format | Guilds | Project Manager | GenMAPP User | Quality Assurance | Coder |
| Teams | Heavy Metal HaterZ | The Class Whoopers | GÉNialOMICS | Oregon Trail Survivors | |||
| Individual Journal Entries | ||||
|---|---|---|---|---|
| Mary Alverson | Week 11 | Week 12 | Week 14 | Week 15 |
| Emily Simso | Week 11 | Week 12 | Week 14 | Week 15 |
| Ron Legaspi | Week 11 | Week 12 | Week 14 | Week 15 |
| Josh Kuroda | Week 11 | Week 12 | Week 14 | Week 15 |
Individual Assessments and Reflections
Malverso Assessments & Reflections
Emily Simso (on Week 15 Assignment Page)
Group Files and Datasets
- GenMAPP Gene Database for assigned species
- ReadMe file to accompany the Gene Database (.pdf)
- Gene Database Testing Report for final submitted Gene Database
- Processed and analyzed DNA microarray dataset (.xls or .xlsx)
- Data file used for import into GenMAPP
- GenMAPP Expression Dataset file
- Exceptions file of data imported into GenMAPP
- Raw MAPPFinder results files:
- .gmf file
- Filtered MAPPFinder Results (.xls or .xlsx)
- Sample MAPP file of a relevant biological pathway for your species (.mapp)
Final Report and Presentation
- File:Final Report 20151218 2 HMH.docx
- PowerPoint presentation given on Tuesday, December 15
