Difference between revisions of "Rlegaspi Week 2"

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(Finished reading frame portion of assignment, indicated open reading frames, and formatting fixes.)
(Fixed formatting issues.)
Line 17: Line 17:
  
 
*Reading Frames from 5' to 3' strand (Original Strand)
 
*Reading Frames from 5' to 3' strand (Original Strand)
−
 
 
**+1''*''
 
**+1''*''
 
  '''RNA Strand:''' 5'-cguaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuua-3'  
 
  '''RNA Strand:''' 5'-cguaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuua-3'  
 
  '''Protein:''' '''''N-ter'''''-R-M-L-I-P-C-S-A-Y-N-P-A-A-S-S-A-G-G-I-L-'''''C-ter'''''  
 
  '''Protein:''' '''''N-ter'''''-R-M-L-I-P-C-S-A-Y-N-P-A-A-S-S-A-G-G-I-L-'''''C-ter'''''  
−
 
 
**+2
 
**+2
 
  '''RNA Strand:''' 5'-guaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuu-3'  
 
  '''RNA Strand:''' 5'-guaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuu-3'  
 
  '''Protein:''' '''''N-ter'''''-V-C-''x''-Y-H-V-P-R-I-T-G-Q-P-P-V-P-L-A-A-F-'''''C-ter'''''  
 
  '''Protein:''' '''''N-ter'''''-V-C-''x''-Y-H-V-P-R-I-T-G-Q-P-P-V-P-L-A-A-F-'''''C-ter'''''  
−
 
 
**+3
 
**+3
 
  '''RNA Strand:''' 5'-uaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuu-3'
 
  '''RNA Strand:''' 5'-uaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuu-3'
 
  '''Protein:''' '''''N-ter'''''-Y-A-N-T-M-F-R-V-''x''-P-S-R-Q-F-R-W-R-H-F-'''''C-ter'''''  
 
  '''Protein:''' '''''N-ter'''''-Y-A-N-T-M-F-R-V-''x''-P-S-R-Q-F-R-W-R-H-F-'''''C-ter'''''  
−
 
 
*Reading Frames from 3' to 5' strand (Complimentary Strand)
 
*Reading Frames from 3' to 5' strand (Complimentary Strand)
−
 
 
**-1
 
**-1
 
  '''RNA Strand:''' 5'-uaaaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcauacg-3'
 
  '''RNA Strand:''' 5'-uaaaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcauacg-3'
 
  '''Protein:''' '''''N-ter'''''-''x''-N-A-A-S-G-T-G-G-W-V-I-R-G-T-W-Y-''x''-H-T-'''''C-ter'''''
 
  '''Protein:''' '''''N-ter'''''-''x''-N-A-A-S-G-T-G-G-W-V-I-R-G-T-W-Y-''x''-H-T-'''''C-ter'''''
−
 
 
**-2''*''
 
**-2''*''
 
  '''RNA Strand:''' 5'-aaaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcaua-3'
 
  '''RNA Strand:''' 5'-aaaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcaua-3'
 
  '''Protein:''' '''''N-ter'''''-K-M-P-P-A-E-L-A-A-G-L-Y-A-E-H-G-I-S-I-'''''C-ter'''''
 
  '''Protein:''' '''''N-ter'''''-K-M-P-P-A-E-L-A-A-G-L-Y-A-E-H-G-I-S-I-'''''C-ter'''''
−
 
 
**-3''*''
 
**-3''*''
 
  '''RNA Strand:''' 5'-aaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcauac-3'
 
  '''RNA Strand:''' 5'-aaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcauac-3'
 
  '''Protein:''' '''''N-ter'''''-K-C-R-Q-R-N-W-R-L-G-Y-T-R-N-M-V-L-A-Y-'''''C-ter'''''
 
  '''Protein:''' '''''N-ter'''''-K-C-R-Q-R-N-W-R-L-G-Y-T-R-N-M-V-L-A-Y-'''''C-ter'''''
  
−
" ''*'' " - Indicates an Open Reading Frame
+
'''Note:'''" ''*'' " - Indicates an Open Reading Frame; ''and'' " ''x'' " - Indicates a Stop Codon
−
" ''x'' " - Indicates a Stop Codon
+
  
 
== Links to User Page and Journal Pages ==
 
== Links to User Page and Journal Pages ==

Revision as of 07:10, 13 September 2015

Individual Journal Assignment Assignment

Homework Partner

Trixie Roque

The Genetic Code

Original DNA Strand

5’-cgtatgctaataccatgttccgcgtataacccagccgccagttccgctggcggcatttta-3’

Complementary DNA Strand to Orginal DNA Strand

3'-gcatacgattatggtacaaggcgcatattgggtcggcggtcaaggcgaccgccgtaaaat-5'

Six Possible Reading Frames in the DNA sequence

  • Reading Frames from 5' to 3' strand (Original Strand)
    • +1*
RNA Strand: 5'-cguaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuua-3' 
Protein: N-ter-R-M-L-I-P-C-S-A-Y-N-P-A-A-S-S-A-G-G-I-L-C-ter
    • +2
RNA Strand: 5'-guaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuu-3' 
Protein: N-ter-V-C-x-Y-H-V-P-R-I-T-G-Q-P-P-V-P-L-A-A-F-C-ter
    • +3
RNA Strand: 5'-uaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuu-3'
Protein: N-ter-Y-A-N-T-M-F-R-V-x-P-S-R-Q-F-R-W-R-H-F-C-ter
  • Reading Frames from 3' to 5' strand (Complimentary Strand)
    • -1
RNA Strand: 5'-uaaaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcauacg-3'
Protein: N-ter-x-N-A-A-S-G-T-G-G-W-V-I-R-G-T-W-Y-x-H-T-C-ter
    • -2*
RNA Strand: 5'-aaaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcaua-3'
Protein: N-ter-K-M-P-P-A-E-L-A-A-G-L-Y-A-E-H-G-I-S-I-C-ter
    • -3*
RNA Strand: 5'-aaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcauac-3'
Protein: N-ter-K-C-R-Q-R-N-W-R-L-G-Y-T-R-N-M-V-L-A-Y-C-ter

Note:" * " - Indicates an Open Reading Frame; and " x " - Indicates a Stop Codon

Links to User Page and Journal Pages

Ron Legaspi
BIOL 367, Fall 2015

Assignment Links
Individual Weekly Journals
Shared Weekly Journals
Retrieved from "https://xmlpipedb.lmucs.io/biodb/fall2015/index.php?title=Rlegaspi_Week_2&oldid=1025"