.gex file:

.gex file:

= MAPPFinder =

== MAPPFinder ==

Launch GenMAPP, I made sure that the correct Gene Database (.gdb) is loaded.

Launched GenMAPP, I made sure that the correct Gene Database (.gdb) is loaded.

* Looked in the lower left-hand corner of the window to see which Gene Database has been selected.

* Looked in the lower left-hand corner of the window to see which Gene Database has been selected.

* I needed to change the Gene Database, so I selected Data > Choose Gene Database.   

* I needed to change the Gene Database, so I selected Data > Choose Gene Database.   

* For the exercise in class on Thursday (10/22/2015), I needed to download the appropriate ''Vibrio cholerae'' Gene Database:

* For the exercise in class on Thursday (10/22/2015), I needed to download the appropriate ''Vibrio cholerae'' Gene Database:

** Half of the class will use the Vc-Std_External_20090622.gdb Gene Database that was initially created by the Fall 2008 Biological Databases class.

** I used the Vc-Std_External_20090622.gdb Gene Database that was initially created by the Fall 2008 Biological Databases class.

*** To download this Gene Database, [http://sourceforge.net/projects/xmlpipedb/files/V.%20cholerae%20Gene%20Database/V.%20cholerae%2020090622/Vc-Std_External_20090622.zip/download follow '''''this link''''' to the XMLPipeDB SourceForge Download page].

*** To download this Gene Database, [http://sourceforge.net/projects/xmlpipedb/files/V.%20cholerae%20Gene%20Database/V.%20cholerae%2020090622/Vc-Std_External_20090622.zip/download follow '''''this link''''' to the XMLPipeDB SourceForge Download page].

** Half of the class will use a new Vc-Std_External_20101022.gdb Gene Database that was created by Drs. Dahlquist and Dionisio a year later.

** My Homework Partner Josh Kuroda used a new Vc-Std_External_20101022.gdb Gene Database that was created by Drs. Dahlquist and Dionisio a year later.

*** To download this Gene Database, [http://sourceforge.net/projects/xmlpipedb/files/V.%20cholerae%20Gene%20Database/V.%20cholerae%2020101022/Vc-Std_External_20101022.zip/download follow '''''this link''''' to the XMLPipeDB SourceForge Download page].

*** To download this Gene Database, [http://sourceforge.net/projects/xmlpipedb/files/V.%20cholerae%20Gene%20Database/V.%20cholerae%2020101022/Vc-Std_External_20101022.zip/download follow '''''this link''''' to the XMLPipeDB SourceForge Download page].

** The members of a pair should each choose a different gene database.

* I clicked on the link for the Gene Database to which I had been assigned, downloaded the file, and saved it into the folder C:\GenMAPP 2 Data\Gene Databases, and extracted it.

* Click on the link for the Gene Database to which you have been assigned, download the file, and save it into the folder C:\GenMAPP 2 Data\Gene Databases, and extract it.

=== GenMAPP Expression Dataset Manager Procedure ===

=== GenMAPP Expression Dataset Manager Procedure ===

* Launch the GenMAPP Program.  Check to make sure the correct Gene Database is loaded.

* Launched the GenMAPP Program.  Checked to make sure the correct Gene Database is loaded.

** Look in the lower, left-hand corner of the main GenMAPP Drafting Board window to see the name of the Gene Database that is loaded.  If this is not the correct Gene Database or it says "No Gene Database", then go to the Data > Choose Gene Database menu item to select the Gene Database you need to perform the analysis.

** Look in the lower, left-hand corner of the main GenMAPP Drafting Board window to see the name of the Gene Database that is loaded.  If this is not the correct Gene Database or it says "No Gene Database", then go to the Data > Choose Gene Database menu item to select the Gene Database you need to perform the analysis.