Difference between revisions of "Blitvak Week 14"
From LMU BioDB 2015
(added work for 12/3) |
(added modified command for match/psql 12/3) |
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END: 2:49 AM | END: 2:49 AM | ||
| − | 12/3 | + | ==12/3== |
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| + | 'p?BCA[A-Z]?[0-9][0-9][0-9][A-Z]?[0-9]?[A-Z, a-z]?'; | ||
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| + | MODIFIED: 'p?BCA[M,S,L][0-9][0-9][0-9][A,a]?[0-9]?[A-Z, a-z]?'; | ||
first object xml editor | first object xml editor | ||
Revision as of 00:05, 4 December 2015
12/1
- Goals: Consult with Anu to make modifications to TallyEngine/GenMAPP (share initial export results)
- Reacquaint with using Excel to track IDs/discrepant IDs (Using Microsoft Excel to Compare ID Lists)
- pgAdmin III work will be involved, in conjunction with Excel, for the new modified .gdb: Will use:
select value from genenametype where type = 'ordered locus';and will export (and use with Excel)
B.cenocepacia_J2315_20151201_gmbuilder-genialomics-20151201
ORF not ORDEREDLOCUS
- XML - 3.72 minutes
- OBO/XML - 5.25 minutes
- Processing: 3.91 minutes
- GOA - 0.04 minutes
EXPORT START: 10:27 PM
END: 2:49 AM
12/3
'p?BCA[A-Z]?[0-9][0-9][0-9][A-Z]?[0-9]?[A-Z, a-z]?';
MODIFIED: 'p?BCA[M,S,L][0-9][0-9][0-9][A,a]?[0-9]?[A-Z, a-z]?';
first object xml editor
6 IDs with problems
bca199f
