Difference between revisions of "Bordetella Pertussis GenMAPP Analysis Deliverables"
From LMU BioDB 2015
Lenaolufson (Talk | contribs) (→Group Files and Datasets: uploaded the ribosome pathway mapp created in genmapp) |
Lenaolufson (Talk | contribs) (→Group Files and Datasets: added the filtered results for criterion0 from genmapp) |
||
| Line 16: | Line 16: | ||
** [[File:Bpertussis mappfinderresults cw20151213-criterion1-GO.txt]] | ** [[File:Bpertussis mappfinderresults cw20151213-criterion1-GO.txt]] | ||
* ''.gmf'' file: [[File:Bpertussis compiledrawdata cw20151213.gmf]] | * ''.gmf'' file: [[File:Bpertussis compiledrawdata cw20151213.gmf]] | ||
| − | * Filtered MAPPFinder Results (''.xls'' or ''.xlsx''): [[File:Bpertussis mappfinderresults filtered cw20151213-Criterion1-GO.xlsx]] | + | * Filtered MAPPFinder Results (''.xls'' or ''.xlsx''): |
| + | ** [[File:Bpertussis mappfinderresults filtered cw20151213-Criterion1-GO.xlsx]] | ||
| + | ** [[File:Bpertussis mappfinderresults filtered cw20151213-Criterion0-GO.xlsx]] | ||
* Sample MAPP file of a relevant biological pathway for your species (''.mapp''): [[File:Bpertussis ribosomepathway cw20151215.mapp]] | * Sample MAPP file of a relevant biological pathway for your species (''.mapp''): [[File:Bpertussis ribosomepathway cw20151215.mapp]] | ||
* [[Gene Database Project Deliverables#Group Report | Group Report]] describing the creation of the Gene Database and the biological analysis of the data (''.doc'', ''.docx'', or ''.pdf'') | * [[Gene Database Project Deliverables#Group Report | Group Report]] describing the creation of the Gene Database and the biological analysis of the data (''.doc'', ''.docx'', or ''.pdf'') | ||
* PowerPoint presentation (''.ppt'', ''.pptx'', or ''.pdf'', given on Tuesday, December 15) | * PowerPoint presentation (''.ppt'', ''.pptx'', or ''.pdf'', given on Tuesday, December 15) | ||
Revision as of 08:11, 14 December 2015
Group Files and Datasets
- GenMAPP Gene Database for assigned species (.gdb): File:Bpertussis-std cw20151210.zip
- ReadMe file to accompany the Gene Database (.pdf)
- Sample ReadMe in Word format: ReadMe_Vc-Std_External_20131122.zip
- Sample ReadMe in markdown (a work in progress)
- Include Gene Database Schema diagram in ReadMe
- Sample schema in Adobe Illustrator format: Vibrio_schema_20101022.zip
- Gene Database Testing Report for final submitted Gene Database (print from wiki to .pdf file)
- Processed and analyzed DNA microarray dataset (.xls or .xlsx): File:Bpertussis compiledrawdata cw20151208.xlsx
- Data file used for import into GenMAPP (.txt or .csv): File:Bpertussis compiledrawdata cw20151208.txt
- GenMAPP Expression Dataset file (.gex): File:Bpertussis expressiondataset cw20151213.gex
- Exceptions file of data imported into GenMAPP (.EX.txt): File:Bpertussis expressiondataset exceptions cw20151213.EX.txt
- Raw MAPPFinder results files (-GO.txt):
- .gmf file: File:Bpertussis compiledrawdata cw20151213.gmf
- Filtered MAPPFinder Results (.xls or .xlsx):
- Sample MAPP file of a relevant biological pathway for your species (.mapp): File:Bpertussis ribosomepathway cw20151215.mapp
- Group Report describing the creation of the Gene Database and the biological analysis of the data (.doc, .docx, or .pdf)
- PowerPoint presentation (.ppt, .pptx, or .pdf, given on Tuesday, December 15)
