Difference between revisions of "Bordetella Pertussis GenMAPP Analysis Deliverables"

Revision as of 07:55, 15 December 2015

Group Files and Datasets

• GenMAPP Gene Database for assigned species (.gdb): File:Bpertussis-std cw20151210.zip
• ReadMe file to accompany the Gene Database (.pdf)
  • Sample ReadMe in Word format: ReadMe_Vc-Std_External_20131122.zip
  • Sample ReadMe in markdown (a work in progress)
  • Include Gene Database Schema diagram in ReadMe
    • Sample schema in Adobe Illustrator format: Vibrio_schema_20101022.zip
• Gene Database Testing Report for final submitted Gene Database (print from wiki to .pdf file)
• Processed and analyzed DNA microarray dataset (.xls or .xlsx): File:Bpertussis compiledrawdata cw20151208.xlsx
• Data file used for import into GenMAPP (.txt or .csv): File:Bpertussis compiledrawdata cw20151208.txt
• GenMAPP Expression Dataset file (.gex): File:Bpertussis expressiondataset cw20151213.gex
• Exceptions file of data imported into GenMAPP (.EX.txt): File:Bpertussis expressiondataset exceptions cw20151213.EX.txt
• Raw MAPPFinder results files (-GO.txt):
  • File:Bpertussis mappfinderresults cw20151213-criterion0-GO.txt
  • File:Bpertussis mappfinderresults cw20151213-criterion1-GO.txt
• .gmf file: File:Bpertussis compiledrawdata cw20151213.gmf
• Filtered MAPPFinder Results (.xls or .xlsx):
  • File:Bpertussis mappfinderresults filtered cw20151213-Criterion1-GO.xlsx
  • File:Bpertussis mappfinderresults filtered cw20151213-Criterion0-GO.xlsx
• Sample MAPP file of a relevant biological pathway for your species (.mapp): File:Bpertussis ribosomepathway cw20151215.mapp
• Group Report describing the creation of the Gene Database and the biological analysis of the data (.doc, .docx, or .pdf)
• PowerPoint presentation: File:Bpertussis findings powerpoint.pdf