Difference between revisions of "Rlegaspi Week 2"
From LMU BioDB 2015
(Fixed formatting issues.) |
(Fixed bullet points and minor formatting issues.) |
||
| Line 16: | Line 16: | ||
==== Six Possible Reading Frames in the DNA sequence ==== | ==== Six Possible Reading Frames in the DNA sequence ==== | ||
| − | + | ===== Reading Frames from 5' to 3' strand (Original Strand) ===== | |
| − | + | *+1''*'' | |
'''RNA Strand:''' 5'-cguaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuua-3' | '''RNA Strand:''' 5'-cguaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuua-3' | ||
'''Protein:''' '''''N-ter'''''-R-M-L-I-P-C-S-A-Y-N-P-A-A-S-S-A-G-G-I-L-'''''C-ter''''' | '''Protein:''' '''''N-ter'''''-R-M-L-I-P-C-S-A-Y-N-P-A-A-S-S-A-G-G-I-L-'''''C-ter''''' | ||
| − | + | *+2 | |
'''RNA Strand:''' 5'-guaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuu-3' | '''RNA Strand:''' 5'-guaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuu-3' | ||
'''Protein:''' '''''N-ter'''''-V-C-''x''-Y-H-V-P-R-I-T-G-Q-P-P-V-P-L-A-A-F-'''''C-ter''''' | '''Protein:''' '''''N-ter'''''-V-C-''x''-Y-H-V-P-R-I-T-G-Q-P-P-V-P-L-A-A-F-'''''C-ter''''' | ||
| − | + | *+3 | |
'''RNA Strand:''' 5'-uaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuu-3' | '''RNA Strand:''' 5'-uaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuu-3' | ||
'''Protein:''' '''''N-ter'''''-Y-A-N-T-M-F-R-V-''x''-P-S-R-Q-F-R-W-R-H-F-'''''C-ter''''' | '''Protein:''' '''''N-ter'''''-Y-A-N-T-M-F-R-V-''x''-P-S-R-Q-F-R-W-R-H-F-'''''C-ter''''' | ||
| − | + | ===== Reading Frames from 3' to 5' strand (Complimentary Strand) ===== | |
| − | + | *-1 | |
'''RNA Strand:''' 5'-uaaaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcauacg-3' | '''RNA Strand:''' 5'-uaaaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcauacg-3' | ||
'''Protein:''' '''''N-ter'''''-''x''-N-A-A-S-G-T-G-G-W-V-I-R-G-T-W-Y-''x''-H-T-'''''C-ter''''' | '''Protein:''' '''''N-ter'''''-''x''-N-A-A-S-G-T-G-G-W-V-I-R-G-T-W-Y-''x''-H-T-'''''C-ter''''' | ||
| − | + | *-2''*'' | |
'''RNA Strand:''' 5'-aaaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcaua-3' | '''RNA Strand:''' 5'-aaaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcaua-3' | ||
'''Protein:''' '''''N-ter'''''-K-M-P-P-A-E-L-A-A-G-L-Y-A-E-H-G-I-S-I-'''''C-ter''''' | '''Protein:''' '''''N-ter'''''-K-M-P-P-A-E-L-A-A-G-L-Y-A-E-H-G-I-S-I-'''''C-ter''''' | ||
| − | + | *-3''*'' | |
'''RNA Strand:''' 5'-aaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcauac-3' | '''RNA Strand:''' 5'-aaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcauac-3' | ||
'''Protein:''' '''''N-ter'''''-K-C-R-Q-R-N-W-R-L-G-Y-T-R-N-M-V-L-A-Y-'''''C-ter''''' | '''Protein:''' '''''N-ter'''''-K-C-R-Q-R-N-W-R-L-G-Y-T-R-N-M-V-L-A-Y-'''''C-ter''''' | ||
| − | '''Note:'''" ''*'' " - Indicates an Open Reading Frame; ''and'' " ''x'' " - Indicates a Stop Codon | + | '''Note:'''" '''*''' " - Indicates an Open Reading Frame; '''''and''''' " '''x''' " - Indicates a Stop Codon |
== Links to User Page and Journal Pages == | == Links to User Page and Journal Pages == | ||
Revision as of 07:14, 13 September 2015
Contents
Individual Journal Assignment Assignment
Homework Partner
The Genetic Code
Original DNA Strand
5’-cgtatgctaataccatgttccgcgtataacccagccgccagttccgctggcggcatttta-3’
Complementary DNA Strand to Orginal DNA Strand
3'-gcatacgattatggtacaaggcgcatattgggtcggcggtcaaggcgaccgccgtaaaat-5'
Six Possible Reading Frames in the DNA sequence
Reading Frames from 5' to 3' strand (Original Strand)
- +1*
RNA Strand: 5'-cguaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuua-3' Protein: N-ter-R-M-L-I-P-C-S-A-Y-N-P-A-A-S-S-A-G-G-I-L-C-ter
- +2
RNA Strand: 5'-guaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuu-3' Protein: N-ter-V-C-x-Y-H-V-P-R-I-T-G-Q-P-P-V-P-L-A-A-F-C-ter
- +3
RNA Strand: 5'-uaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuu-3' Protein: N-ter-Y-A-N-T-M-F-R-V-x-P-S-R-Q-F-R-W-R-H-F-C-ter
Reading Frames from 3' to 5' strand (Complimentary Strand)
- -1
RNA Strand: 5'-uaaaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcauacg-3' Protein: N-ter-x-N-A-A-S-G-T-G-G-W-V-I-R-G-T-W-Y-x-H-T-C-ter
- -2*
RNA Strand: 5'-aaaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcaua-3' Protein: N-ter-K-M-P-P-A-E-L-A-A-G-L-Y-A-E-H-G-I-S-I-C-ter
- -3*
RNA Strand: 5'-aaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcauac-3' Protein: N-ter-K-C-R-Q-R-N-W-R-L-G-Y-T-R-N-M-V-L-A-Y-C-ter
Note:" * " - Indicates an Open Reading Frame; and " x " - Indicates a Stop Codon
Links to User Page and Journal Pages
Ron Legaspi
BIOL 367, Fall 2015
Assignment Links
- Week 1 Assignment
- Week 2 Assignment
- Week 3 Assignment
- Week 4 Assignment
- Week 5 Assignment
- Week 6 Assignment
- Week 7 Assignment
- Week 8 Assignment
- Week 9 Assignment
- Week 10 Assignment
- Week 11 Assignment
- Week 12 Assignment
- Week 14 Assignment
- Week 15 Assignment
Individual Weekly Journals
- Individual Journal Week 1 - This is my User Page
- Individual Journal Week 2
- Individual Journal Week 3
- Individual Journal Week 4
- Individual Journal Week 5
- Individual Journal Week 6
- Individual Journal Week 7
- Individual Journal Week 8
- Individual Journal Week 9
- Individual Journal Week 10
- Individual Journal Week 11
- Individual Journal Week 12
- Individual Journal Week 14
- Individual Journal Week 15
