|
|
| | ==== Six Possible Reading Frames in the DNA sequence ==== | | ==== Six Possible Reading Frames in the DNA sequence ==== |
| | | | |
| − | *Reading Frames from 5' to 3' strand (Original Strand)
| + | ===== Reading Frames from 5' to 3' strand (Original Strand) ===== |
| − | **+1''*''
| + | *+1''*'' |
| | '''RNA Strand:''' 5'-cguaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuua-3' | | '''RNA Strand:''' 5'-cguaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuua-3' |
| | '''Protein:''' '''''N-ter'''''-R-M-L-I-P-C-S-A-Y-N-P-A-A-S-S-A-G-G-I-L-'''''C-ter''''' | | '''Protein:''' '''''N-ter'''''-R-M-L-I-P-C-S-A-Y-N-P-A-A-S-S-A-G-G-I-L-'''''C-ter''''' |
| − | **+2
| + | *+2 |
| | '''RNA Strand:''' 5'-guaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuu-3' | | '''RNA Strand:''' 5'-guaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuu-3' |
| | '''Protein:''' '''''N-ter'''''-V-C-''x''-Y-H-V-P-R-I-T-G-Q-P-P-V-P-L-A-A-F-'''''C-ter''''' | | '''Protein:''' '''''N-ter'''''-V-C-''x''-Y-H-V-P-R-I-T-G-Q-P-P-V-P-L-A-A-F-'''''C-ter''''' |
| − | **+3
| + | *+3 |
| | '''RNA Strand:''' 5'-uaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuu-3' | | '''RNA Strand:''' 5'-uaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuu-3' |
| | '''Protein:''' '''''N-ter'''''-Y-A-N-T-M-F-R-V-''x''-P-S-R-Q-F-R-W-R-H-F-'''''C-ter''''' | | '''Protein:''' '''''N-ter'''''-Y-A-N-T-M-F-R-V-''x''-P-S-R-Q-F-R-W-R-H-F-'''''C-ter''''' |
| − | *Reading Frames from 3' to 5' strand (Complimentary Strand)
| + | ===== Reading Frames from 3' to 5' strand (Complimentary Strand) ===== |
| − | **-1
| + | *-1 |
| | '''RNA Strand:''' 5'-uaaaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcauacg-3' | | '''RNA Strand:''' 5'-uaaaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcauacg-3' |
| | '''Protein:''' '''''N-ter'''''-''x''-N-A-A-S-G-T-G-G-W-V-I-R-G-T-W-Y-''x''-H-T-'''''C-ter''''' | | '''Protein:''' '''''N-ter'''''-''x''-N-A-A-S-G-T-G-G-W-V-I-R-G-T-W-Y-''x''-H-T-'''''C-ter''''' |
| − | **-2''*''
| + | *-2''*'' |
| | '''RNA Strand:''' 5'-aaaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcaua-3' | | '''RNA Strand:''' 5'-aaaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcaua-3' |
| | '''Protein:''' '''''N-ter'''''-K-M-P-P-A-E-L-A-A-G-L-Y-A-E-H-G-I-S-I-'''''C-ter''''' | | '''Protein:''' '''''N-ter'''''-K-M-P-P-A-E-L-A-A-G-L-Y-A-E-H-G-I-S-I-'''''C-ter''''' |
| − | **-3''*''
| + | *-3''*'' |
| | '''RNA Strand:''' 5'-aaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcauac-3' | | '''RNA Strand:''' 5'-aaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcauac-3' |
| | '''Protein:''' '''''N-ter'''''-K-C-R-Q-R-N-W-R-L-G-Y-T-R-N-M-V-L-A-Y-'''''C-ter''''' | | '''Protein:''' '''''N-ter'''''-K-C-R-Q-R-N-W-R-L-G-Y-T-R-N-M-V-L-A-Y-'''''C-ter''''' |
| | | | |
Exception encountered, of type "Error"
[c4bcc559] /biodb/fall2015/index.php?diff=prev&oldid=1026&title=Rlegaspi_Week_2 Error from line 434 of /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php: Call to undefined function each()
Backtrace:
#0 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(544): DiffEngine->diag()
#1 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(344): DiffEngine->compareSeq()
#2 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(227): DiffEngine->diffLocal()
#3 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(721): DiffEngine->diff()
#4 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(859): Diff->__construct()
#5 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(980): MappedDiff->__construct()
#6 /apps/xmlpipedb/biodb/fall2015/includes/diff/TableDiffFormatter.php(194): WordLevelDiff->__construct()
#7 /apps/xmlpipedb/biodb/fall2015/includes/diff/DiffFormatter.php(140): TableDiffFormatter->changed()
#8 /apps/xmlpipedb/biodb/fall2015/includes/diff/DiffFormatter.php(82): DiffFormatter->block()
#9 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(888): DiffFormatter->format()
#10 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(802): DifferenceEngine->generateTextDiffBody()
#11 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(733): DifferenceEngine->generateContentDiffBody()
#12 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(662): DifferenceEngine->getDiffBody()
#13 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(632): DifferenceEngine->getDiff()
#14 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(453): DifferenceEngine->showDiff()
#15 /apps/xmlpipedb/biodb/fall2015/includes/page/Article.php(795): DifferenceEngine->showDiffPage()
#16 /apps/xmlpipedb/biodb/fall2015/includes/page/Article.php(506): Article->showDiffPage()
#17 /apps/xmlpipedb/biodb/fall2015/includes/actions/ViewAction.php(44): Article->view()
#18 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(395): ViewAction->show()
#19 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(273): MediaWiki->performAction()
#20 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(566): MediaWiki->performRequest()
#21 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(414): MediaWiki->main()
#22 /apps/xmlpipedb/biodb/fall2015/index.php(44): MediaWiki->run()
#23 {main}