Difference between revisions of "Troque Week 3"

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(Divided up each reading frame)
(Corrected commands for -1, -2, -3 frames)
Line 18: Line 18:
 
  Yields: YYISIGTMAKEDNIELETLPNTMFRV-PSRQFRWRHFN
 
  Yields: YYISIGTMAKEDNIELETLPNTMFRV-PSRQFRWRHFN
  
−
  -1:    rev prokaryote.txt | sed "s/t/u/g" | sed "s/.../& /g" | sed -f genetic-code.sed |
+
  -1:    rev prokaryote.txt | sed "s/t/u/g" | sed "y/acug/ugac/" | sed "s/.../& /g" | sed -f genetic-code.sed |
 
         sed "y/acug/    /" | sed "s/ //g"
 
         sed "y/acug/    /" | sed "s/ //g"
−
  Yields: QFYGGRLDRRPNMRLVP-SVAKFKL-QKKPVAWITLYH
+
  Yields: VKMPPAELAAGLYAEHGIRQRFKFNIVFFGHRTY-NIV
  
−
  -2:    rev prokaryote.txt | sed "s/t/u/g" | sed "s/^.//g" | sed "s/.../& /g" | sed -f genetic-code.sed |  
+
  -2:    rev prokaryote.txt | sed "s/t/u/g" | sed "y/acug/ugac/" | sed "s/^.//g" | sed "s/.../& /g" | sed -f genetic-code.sed |  
 
         sed "y/acug/    /" | sed "s/ //g"
 
         sed "y/acug/    /" | sed "s/ //g"
−
  Yields: NFTAVALTADPICALYHNPLQSSSYNRRNR-HG-LYII
+
  Yields: LKCRQRNWRLGYTRNMVLGNVSSSILSSLAIVPIEI--
  
−
  -3:    rev prokaryote.txt | sed "s/t/u/g" | sed "s/^..//g" | sed "s/.../& /g" | sed -f genetic-code.sed |  
+
  -3:    rev prokaryote.txt | sed "s/t/u/g" | sed "y/acug/ugac/" | sed "s/^..//g" | sed "s/.../& /g" | sed -f genetic-code.sed |  
 
         sed "y/acug/    /" | sed "s/ //g"
 
         sed "y/acug/    /" | sed "s/ //g"
−
  Yields: ILRRSP-PPTQYAPCTIIRCKVQVITEETGSMDNFISS
+
  Yields: -NAASGTGGWVIRGTWY-ATFQVQYCLLWPSYLLKYSR
−
 
+
  
 
{{Template:Troque_Journal}}
 
{{Template:Troque_Journal}}

Revision as of 21:18, 21 September 2015

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The Genetic Code, by computer

Complement of DNA

To find the complement of the DNA strand, the following command is used: 

cat prokaryote.txt | sed "y/actg/tgac/"

Reading Frames

+1:     cat prokaryote.txt | sed "s/t/u/g" | sed "s/.../& /g" | sed -f genetic-code.sed | sed "y/acug/    /" | sed "s/ //g"
Yields: STIFQ-VRWPKKTILNLKRCLIPCSAYNPAASSAGGIL

+2:     cat prokaryote.txt | sed "s/t/u/g" | sed "s/^.//g" | sed "s/.../& /g" | sed -f genetic-code.sed |
        sed "y/acug/    /" | sed "s/ //g"
Yields: LLYFNRYDGQRRQY-T-NVA-YHVPRITQPPVPLAAF-

+3:     cat prokaryote.txt | sed "s/t/u/g" | sed "s/^..//g" | sed "s/.../& /g" | sed -f genetic-code.sed | 
        sed "y/acug/    /" | sed "s/ //g"
Yields: YYISIGTMAKEDNIELETLPNTMFRV-PSRQFRWRHFN

-1:     rev prokaryote.txt | sed "s/t/u/g" | sed "y/acug/ugac/" | sed "s/.../& /g" | sed -f genetic-code.sed |
        sed "y/acug/    /" | sed "s/ //g"
Yields: VKMPPAELAAGLYAEHGIRQRFKFNIVFFGHRTY-NIV

-2:     rev prokaryote.txt | sed "s/t/u/g" | sed "y/acug/ugac/" | sed "s/^.//g" | sed "s/.../& /g" | sed -f genetic-code.sed | 
        sed "y/acug/    /" | sed "s/ //g"
Yields: LKCRQRNWRLGYTRNMVLGNVSSSILSSLAIVPIEI--

-3:     rev prokaryote.txt | sed "s/t/u/g" | sed "y/acug/ugac/" | sed "s/^..//g" | sed "s/.../& /g" | sed -f genetic-code.sed | 
        sed "y/acug/    /" | sed "s/ //g"
Yields: -NAASGTGGWVIRGTWY-ATFQVQYCLLWPSYLLKYSR

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