Difference between revisions of "Msaeedi23 Week 6"

Revision as of 03:56, 15 October 2015

Table Creation on PostgreSQL

Start by logging into ssh & enter password

ssh <msaeedi@my.cs.lmu.edu>

Then I inputted:

ls To show the files in the directory that we want to use.

In PostgreSQL I typed the following to create an "application" table:

create table application (ApplNo int primary key, ApplType varchar, 
SponsorApplicant varchar, MostRecentLabelFlag boolean, CurrentPatentFlag boolean, 
ActionType varchar, ChemicalType int, Ther_Potential varchar, OrphanCode varchar);

Using similar techniques I typed in the following command into PostgreSQL to create the "Product" table:

create table product (ApplNo int references application, ProductNo int, Form varchar,
Dosage varchar, ProductMktStatus int, TECode varchar, ReferenceDrug int,
drugname varchar, activeingred varchar);

Formatting application.txt

I removed the spaces using the regex for the tab character which was \t. Redirected the processed data and formatted the original lines using:

cat application.txt | sed "1D" | sed "s/\t/,'/" | sed "s/\t/','/" | sed "s/\t/',/" | sed "s/\t/,/" | sed "s/\t/,'/" | 
sed "s/\t/',/" | sed "s/\t/,'/" | sed "s/\t/'/" | sed "s/,,/,null,/g"

Following this command it was necessary to remove excess spaces:

cat application.txt | sed "1D" | sed "s/\t/,'/" | sed "s/\t/','/" | sed "s/\t/',/" | sed "s/\t/,/" | sed "s/\t/,'/" | 
sed "s/\t/',/" | sed "s/\t/,'/" | sed "s/\t/'/" | sed "s/,,/,null,/g" | sed "s/   *//g"

Then I targeted the V at the end of every line, if there was one there I put it in quotes, if not I added a null:

cat application.txt | sed "1D" | sed "s/\t/,'/" | sed "s/\t/','/" | sed "s/\t/',/" | sed "s/\t/,/" | sed "s/\t/,'/" | 
sed "s/\t/',/" | sed "s/\t/,'/" | sed "s/\t/'/" | sed "s/,,/,null,/g" | sed "s/   *//g" | sed "s/V\r$/,'V'/g"

Lastly I added null to the end of each line, and replaced the empty characters -"- with null as well:

cat application.txt | sed "1D" | sed "s/\t/,'/" | sed "s/\t/','/" | sed "s/\t/',/" | sed "s/\t/,/" | sed "s/\t/,'/" | 
sed "s/\t/',/" | sed "s/\t/,'/" | sed "s/\t/'/" | sed "s/,,/,null,/g" | sed "s/   *//g" | sed "s/V\r$/,'V'/g" | sed "s/\r$/,null/g" | sed "s/,'V',null/,'V'/g" | sed "s/,,/,null,/g"

Finally, we pipe it all into the application.sql.txt file:

cat application.txt | sed "1D" | sed "s/\t/,'/" | sed "s/\t/','/" | sed "s/\t/',/" | sed "s/\t/,/" | sed "s/\t/,'/" | 
sed "s/\t/',/" | sed "s/\t/,'/" | sed "s/\t/'/" | sed "s/,,/,null,/g" | sed "s/   *//g" | sed "s/V\r$/,'V'/g" | sed "s/\r$/,null/g" | sed "s/,'V',null/,'V'/g" | sed "s/,,/,null,/g" | sed "s/^/insert into 
application(ApplNo,ApplType,SponsorApplicant,MostRecentLabelAvailableFlag, CurrentPatentFlag,ActionType,ChemicalType,Ther_Potential,Orphan_Code) values(/g" | sed "1d"  > ~/public_html/application.sql.txt\

Formatting product.txt

This was much easier to do after formatting the application.txt due to the fact that I looked over the data prior to processing it:
cat Product.txt | 
sed "1D" | 
sed "s/'//g"| 
sed "s/\t/,/" | 
sed "s/\t/,'/" | 
sed "s/\t/','/" | 
sed "s/\t/',/" | 
sed "s/\t/,'/" | 
sed "s/\t/',/" | 
sed "s/\t/,'/" | 
sed "s/\t/','/" | 
sed "s/\r$/'/g" | 
sed "s/,,/,null,/g" | 
Finally we pipe it all into the product.sql.txt file:
sed "s/^/insert into product(ApplNo,ProductNo,Form,Dosage,ProductMktStatus,TECode,
ReferenceDrug,drugname,activeingred) values(/g" > ~/public_html/Product.sql.txt