Difference between revisions of "Anuvarsh Week 8"

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==Electronic Lab Notebook==
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=Electronic Lab Notebook=
 
*[[Media:Merrell_Compiled_Raw_Data_Vibrio_AV_20151015.xls|Part 1 Spreadsheet from Class on 10/15/2015]]
 
*[[Media:Merrell_Compiled_Raw_Data_Vibrio_AV_20151015.xls|Part 1 Spreadsheet from Class on 10/15/2015]]
 
*[[Media:Merrell_Compiled_Raw_Data_Vibrio_AV_20151015.txt|Part 2 Text File from Class on 10/20/2015]]
 
*[[Media:Merrell_Compiled_Raw_Data_Vibrio_AV_20151015.txt|Part 2 Text File from Class on 10/20/2015]]
 
*[[Media:Merrell_Compiled_Raw_Data_Vibrio_AV_20151015.EX.txt |Exceptions List from Raw Data Conversion on GenMAPP]]
 
*[[Media:Merrell_Compiled_Raw_Data_Vibrio_AV_20151015.EX.txt |Exceptions List from Raw Data Conversion on GenMAPP]]
  
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==Statistical Analysis of Vibrio cholerae Microarray Data (Part 1)==
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==MAPPFinder Analysis of Vibrio cholerae Microarray Data (Part 2)==
 
===Reminders===
 
===Reminders===
 
*Finish the Sanity Check  
 
*Finish the Sanity Check  
 
*I used the 2010 Vibrio Cholera database
 
*I used the 2010 Vibrio Cholera database
 
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<br>
===Part 2: GenMAPP===
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*When uploading my tab delimited file to the GenMAPP software for conversion, 121 errors were detected in my raw data.
 
*When uploading my tab delimited file to the GenMAPP software for conversion, 121 errors were detected in my raw data.
 
*My partner, Brandon L., had 772 errors detected in his raw data conversion while using the 2009 Vibrio Cholera database.  
 
*My partner, Brandon L., had 772 errors detected in his raw data conversion while using the 2009 Vibrio Cholera database.  

Revision as of 22:48, 20 October 2015

Electronic Lab Notebook

Statistical Analysis of Vibrio cholerae Microarray Data (Part 1)

MAPPFinder Analysis of Vibrio cholerae Microarray Data (Part 2)

Reminders

  • Finish the Sanity Check
  • I used the 2010 Vibrio Cholera database


  • When uploading my tab delimited file to the GenMAPP software for conversion, 121 errors were detected in my raw data.
  • My partner, Brandon L., had 772 errors detected in his raw data conversion while using the 2009 Vibrio Cholera database.
    • This difference in errors is most likely due to the extensiveness of our databases. Because Brandon was using an older version of the database while I was using a newer version, it is possible that his version had fewer genes than mine.

Other Links

User Page: Anindita Varshneya
Class Page: BIOL/CMSI 367: Biological Databases, Fall 2015
Group Page: GÉNialOMICS

Assignment Pages

Week 1 Assignment
Week 2 Assignment
Week 3 Assignment
Week 4 Assignment
Week 5 Assignment
Week 6 Assignment
Week 7 Assignment
Week 8 Assignment
Week 9 Assignment
Week 10 Assignment
Week 11 Assignment
Week 12 Assignment
No Week 13 Assignment
Week 14 Assignment
Week 15 Assignment

Individual Journals

Individual Journal Week 2
Individual Journal Week 3
Individual Journal Week 4
Individual Journal Week 5
Individual Journal Week 6
Individual Journal Week 7
Individual Journal Week 8
Individual Journal Week 9
Individual Journal Week 10
Individual Journal Week 11
Individual Journal Week 12
Individual Journal Week 14
Individual Journal Week 15

Shared Journals

Class Journal Week 1
Class Journal Week 2
Class Journal Week 3
Class Journal Week 4
Class Journal Week 5
Class Journal Week 6
Class Journal Week 7
Class Journal Week 8
Class Journal Week 9
GÉNialOMICS Journal Week 10
GÉNialOMICS Journal Week 11
GÉNialOMICS Journal Week 12
GÉNialOMICS Journal Week 14
GÉNialOMICS Journal Week 15