Difference between revisions of "Emilysimso Week 10"
From LMU BioDB 2015
Emilysimso (Talk | contribs) (→Chosen Paper Information: added copyright info) |
Emilysimso (Talk | contribs) (→Microarray: added section) |
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*Has LMU paid subscription: no | *Has LMU paid subscription: no | ||
| − | ==Microarray== | + | ==Microarray Paper== |
*Browsed all of ArrayExpress | *Browsed all of ArrayExpress | ||
*Filtered search results: Shewanella oneidensis, RNA assay, Array assay, All arrays | *Filtered search results: Shewanella oneidensis, RNA assay, Array assay, All arrays | ||
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**Look for transcription profiling by array | **Look for transcription profiling by array | ||
**Want a large assay number | **Want a large assay number | ||
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| + | ===Chosen Paper=== | ||
Revision as of 02:26, 8 November 2015
In Class Notes - what you need for annotated bibliography
- Genome Sequence paper - find the best one (not for a subspecies)
- Microarray data paper - data that will be analyzed
- 1-2 papers per group member on species (will rank on group page on which to focus on)\
Electronic lab notebook - details the search for these papers
Individual page - annotate bibliography
Teams page - copy genome paper and create ranked list
Use APA style to cite, make sure to translate into wiki text
DOI = primary ID for an article (digital object identifier)
Contents
Genome Sequence Paper
PubMed
- First keyword search: Shewanella Oneidensis genome sequence, 128 results from PubMed
- Second search: Shewanella Oneidensis in Genome, there were 5 publications
- Advanced search: Shewanella Oneidensis genome (in Title/Abstract section), 3 results
Google Scholar
- First search: Shewanella Oneidensis genome sequence, 7,450 results
- Second search: Shewanella Oneidensis complete genome sequence, 6,460 results
- Removed patents, had 6,220 results
- Searched for papers since 2011, got 2,950 results
Web of Science
- First search: Shewanella Oneidensis genome, 441 results
- Refined by selecting just articles, got 262 results
Chosen Paper Information
- APA citation: Heidelberg, J. F., Paulsen, I. T., Nelson, K. E., Gaidos, E. J., Nelson, W. C., Read, T. D., ... & Fraser, C. M. (2002). Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis. Nature biotechnology, 20(11), 1118-1123.
- PubMed abstract
- PubMedCentral article:
- Full text from publisher website
- PDF file from publisher website
- Article rights: copyright owned by publisher
- Publishing organization of article: Nature Publishing Group
- Print or online only: online only
- Has LMU paid subscription: no
Microarray Paper
- Browsed all of ArrayExpress
- Filtered search results: Shewanella oneidensis, RNA assay, Array assay, All arrays
- Had 20 experiments
- Look for transcription profiling by array
- Want a large assay number
