Difference between revisions of "GENialOMICS"
From LMU BioDB 2015
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− | = | + | =Week 10= |
*On November 3, 2015, GÉNialOMICS chose to create database for ''Burkholderia cenocepacia''. | *On November 3, 2015, GÉNialOMICS chose to create database for ''Burkholderia cenocepacia''. | ||
*On November 5, 2015, a journal detailing the complete genome of ''Burkholderia cenocepacia'' (strain J2315) titled [http://jb.asm.org/content/191/1/261.short The Genome of Burkholderia cenocepacia J2315, an Epidemic Pathogen of Cystic Fibrosis Patients] was found. | *On November 5, 2015, a journal detailing the complete genome of ''Burkholderia cenocepacia'' (strain J2315) titled [http://jb.asm.org/content/191/1/261.short The Genome of Burkholderia cenocepacia J2315, an Epidemic Pathogen of Cystic Fibrosis Patients] was found. | ||
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* Also on November 10, 2015, a journal using the ''B. cenocepacia'' genome in a microarray experiment titled [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3596321/ Biofilm-Grown ''Burkholderia cepacia'' Complex Cells Survive Antibiotic Treatment by Avoiding Production of Reactive Oxygen Species] was identified and selected for analysis. | * Also on November 10, 2015, a journal using the ''B. cenocepacia'' genome in a microarray experiment titled [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3596321/ Biofilm-Grown ''Burkholderia cepacia'' Complex Cells Survive Antibiotic Treatment by Avoiding Production of Reactive Oxygen Species] was identified and selected for analysis. | ||
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+ | =Weel 11= | ||
+ | {| class="wikitable" | ||
+ | !colspan="9"|Weekly Goals and Progress | ||
+ | |- | ||
+ | |rowspan="2"|[[User:Anuvarsh|'''Anu Varshneya''']] | ||
+ | |'''Goals''' | ||
+ | | | ||
+ | * Complete journal club individual assignment | ||
+ | * Create and practice journal club presentation with Brandon | ||
+ | * Find a MOD | ||
+ | * Create project timeline with soft deadlines for each person/milestone | ||
+ | * Complete milestone 0: Working Environment Setup | ||
+ | * Complete milestone 1: Version Control Setup | ||
+ | * Begin milestone 2: “Developer Rig” Setup and Initial As-Is Build | ||
+ | * Reformat Home Page with Dr. Dahlquists recommendations | ||
+ | |- | ||
+ | |'''Progress''' | ||
+ | | | ||
+ | *Found a possible [http://www.burkholderia.com/ model organism database] (with Brandon Litvak) | ||
+ | |- | ||
+ | |rowspan="2"|[[User:Blitvak|'''Brandon Litvak''']] | ||
+ | |'''Goals''' | ||
+ | | | ||
+ | |- | ||
+ | |'''Progress''' | ||
+ | | | ||
+ | * Found a possible [http://www.burkholderia.com/ model organism database]. | ||
+ | |- | ||
+ | |rowspan="2"|[[User:Vpachec3|'''Veronica Pacheco''']] | ||
+ | |'''Goals''' | ||
+ | | | ||
+ | ''Work with Kevin Wyllie'' | ||
+ | * Understand experimental design | ||
+ | * Understand sample-data relationship | ||
+ | ** raw.zip and .sdrf | ||
+ | ** Construct sample-data diagram | ||
+ | * Develop compiled raw data file | ||
+ | |- | ||
+ | |'''Progress''' | ||
+ | | | ||
+ | |- | ||
+ | |rowspan="2"|[[User:Kwyllie|'''Kevin Wyllie''']] | ||
+ | |'''Goals''' | ||
+ | | | ||
+ | ''Work with Veronica Pacheco'' | ||
+ | * Understand experimental design | ||
+ | * Understand sample-data relationship | ||
+ | ** raw.zip and .sdrf | ||
+ | ** Construct sample-data diagram | ||
+ | * Develop compiled raw data file | ||
+ | |- | ||
+ | |'''Progress''' | ||
+ | | | ||
+ | |} | ||
+ | |||
+ | ==Other Progress:== | ||
+ | * A journal using the ''B. cenocepacia'' genome in a microarray experiment titled [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3596321/ Biofilm-Grown ''Burkholderia cepacia'' Complex Cells Survive Antibiotic Treatment by Avoiding Production of Reactive Oxygen Species] was approved for analysis. | ||
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+ | <br> |
Revision as of 23:54, 12 November 2015
Weekly Group Assignments | Shared Group Journals | Project Links | Team Members |
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Week 10
- On November 3, 2015, GÉNialOMICS chose to create database for Burkholderia cenocepacia.
- On November 5, 2015, a journal detailing the complete genome of Burkholderia cenocepacia (strain J2315) titled The Genome of Burkholderia cenocepacia J2315, an Epidemic Pathogen of Cystic Fibrosis Patients was found.
- Also on November 10, 2015, a journal using the B. cenocepacia genome in a microarray experiment titled Biofilm-Grown Burkholderia cepacia Complex Cells Survive Antibiotic Treatment by Avoiding Production of Reactive Oxygen Species was identified and selected for analysis.
Weel 11
Weekly Goals and Progress | ||||||||
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Anu Varshneya | Goals |
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Progress |
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Brandon Litvak | Goals | |||||||
Progress |
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Veronica Pacheco | Goals |
Work with Kevin Wyllie
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Progress | ||||||||
Kevin Wyllie | Goals |
Work with Veronica Pacheco
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Progress |
Other Progress:
- A journal using the B. cenocepacia genome in a microarray experiment titled Biofilm-Grown Burkholderia cepacia Complex Cells Survive Antibiotic Treatment by Avoiding Production of Reactive Oxygen Species was approved for analysis.