Difference between revisions of "GENialOMICS"

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(Burkholderia cenocepacia: added microarray paper to news items)
(added work status table -- needs to reformatted to have names across columns and goals/progress down rows)
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[[Image: Genialomics-banner.jpg | center | 1055px]]
 
[[Image: Genialomics-banner.jpg | center | 1055px]]
 
<br>
 
<br>
=Group Members=
+
{{Template:GÉNialOMICS}}
Project Manager and Coder: [[User:Anuvarsh | Anu Varshneya]]<br>
+
Quality Assurance: [[User:Blitvak | Brandon Litvak]]<br>
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GenMAPP Users: [[User:Vpachec3 | Veronica Pacheco]] & [[User:Kwyllie | Kevin Wyllie]]<br>
+
 
<br>
 
<br>
=''Burkholderia cenocepacia''=
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=Week 10=
 
*On November 3, 2015, GÉNialOMICS chose to create database for ''Burkholderia cenocepacia''.
 
*On November 3, 2015, GÉNialOMICS chose to create database for ''Burkholderia cenocepacia''.
 
*On November 5, 2015, a journal detailing the complete genome of ''Burkholderia cenocepacia'' (strain J2315) titled [http://jb.asm.org/content/191/1/261.short The Genome of Burkholderia cenocepacia J2315, an Epidemic Pathogen of Cystic Fibrosis Patients]  was found.
 
*On November 5, 2015, a journal detailing the complete genome of ''Burkholderia cenocepacia'' (strain J2315) titled [http://jb.asm.org/content/191/1/261.short The Genome of Burkholderia cenocepacia J2315, an Epidemic Pathogen of Cystic Fibrosis Patients]  was found.
*On November 10, 2015, a possible [http://www.burkholderia.com/ model organism database] was found.
 
 
* Also on November 10, 2015, a journal using the ''B. cenocepacia'' genome in a microarray experiment titled [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3596321/ Biofilm-Grown ''Burkholderia cepacia'' Complex Cells Survive Antibiotic Treatment by Avoiding Production of Reactive Oxygen Species] was identified and selected for analysis.
 
* Also on November 10, 2015, a journal using the ''B. cenocepacia'' genome in a microarray experiment titled [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3596321/ Biofilm-Grown ''Burkholderia cepacia'' Complex Cells Survive Antibiotic Treatment by Avoiding Production of Reactive Oxygen Species] was identified and selected for analysis.
 
<br>
 
<br>
{{Template:GÉNialOMICS}}
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 +
=Weel 11=
 +
{| class="wikitable"
 +
!colspan="9"|Weekly Goals and Progress
 +
|-
 +
|rowspan="2"|[[User:Anuvarsh|'''Anu Varshneya''']]
 +
|'''Goals'''
 +
|
 +
* Complete journal club individual assignment
 +
* Create and practice journal club presentation with Brandon
 +
* Find a MOD
 +
* Create project timeline with soft deadlines for each person/milestone
 +
* Complete milestone 0: Working Environment Setup
 +
* Complete milestone 1: Version Control Setup
 +
* Begin milestone 2: “Developer Rig” Setup and Initial As-Is Build
 +
* Reformat Home Page with Dr. Dahlquists recommendations
 +
|-
 +
|'''Progress'''
 +
|
 +
*Found a possible [http://www.burkholderia.com/ model organism database] (with Brandon Litvak)
 +
|-
 +
|rowspan="2"|[[User:Blitvak|'''Brandon Litvak''']]
 +
|'''Goals'''
 +
|
 +
|-
 +
|'''Progress'''
 +
|
 +
* Found a possible [http://www.burkholderia.com/ model organism database].
 +
|-
 +
|rowspan="2"|[[User:Vpachec3|'''Veronica Pacheco''']]
 +
|'''Goals'''
 +
|
 +
''Work with Kevin Wyllie''
 +
* Understand experimental design
 +
* Understand sample-data relationship
 +
** raw.zip and .sdrf
 +
** Construct sample-data diagram
 +
* Develop compiled raw data file
 +
|-
 +
|'''Progress'''
 +
|
 +
|-
 +
|rowspan="2"|[[User:Kwyllie|'''Kevin Wyllie''']]
 +
|'''Goals'''
 +
|
 +
''Work with Veronica Pacheco''
 +
* Understand experimental design
 +
* Understand sample-data relationship
 +
** raw.zip and .sdrf
 +
** Construct sample-data diagram
 +
* Develop compiled raw data file
 +
|-
 +
|'''Progress'''
 +
|
 +
|}
 +
 
 +
==Other Progress:==
 +
* A journal using the ''B. cenocepacia'' genome in a microarray experiment titled [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3596321/ Biofilm-Grown ''Burkholderia cepacia'' Complex Cells Survive Antibiotic Treatment by Avoiding Production of Reactive Oxygen Species] was approved for analysis.
 +
 
 +
<br>

Revision as of 23:54, 12 November 2015

Genialomics-banner.jpg


Weekly Group Assignments Shared Group Journals Project Links Team Members


Week 10


Weel 11

Weekly Goals and Progress
Anu Varshneya Goals
  • Complete journal club individual assignment
  • Create and practice journal club presentation with Brandon
  • Find a MOD
  • Create project timeline with soft deadlines for each person/milestone
  • Complete milestone 0: Working Environment Setup
  • Complete milestone 1: Version Control Setup
  • Begin milestone 2: “Developer Rig” Setup and Initial As-Is Build
  • Reformat Home Page with Dr. Dahlquists recommendations
Progress
Brandon Litvak Goals
Progress
Veronica Pacheco Goals

Work with Kevin Wyllie

  • Understand experimental design
  • Understand sample-data relationship
    • raw.zip and .sdrf
    • Construct sample-data diagram
  • Develop compiled raw data file
Progress
Kevin Wyllie Goals

Work with Veronica Pacheco

  • Understand experimental design
  • Understand sample-data relationship
    • raw.zip and .sdrf
    • Construct sample-data diagram
  • Develop compiled raw data file
Progress

Other Progress: