|
|
| *What were the methods used in the study? | | *What were the methods used in the study? |
| **First, the researchers amplified a strand of wild-type S. oneidensis MR-1 using PCR. They confirmed that they had the desired sequence using DNA sequencing. (14) | | **First, the researchers amplified a strand of wild-type S. oneidensis MR-1 using PCR. They confirmed that they had the desired sequence using DNA sequencing. (14) |
− | **To test the uptake of iron in aerobic versus anaerobic conditions, the MR-1 was first grown to mid-log phase and diluted. They then created diluted solutions of 2,2’-dipyridyl in 80 M, 160 M, 240 M, and 320 M concentrations. This was done in triplicates for each condition. Next, ferrous sulfate solution was added to replete the iron. They used a Luria-Bertani medium at 30 C for the aerobic culturing and supplemented this medium with 10mM lactate and an electron acceptor for the anaerobic culturing. (14) | + | **To test the uptake of iron in aerobic versus anaerobic conditions, the MR-1 was first grown to mid-log phase and diluted. They then created diluted solutions of 2,2’-dipyridyl in 80 micro-M, 160 micro-M, 240 micro-M, and 320 micro-M concentrations. This was done in triplicates for each condition. Next, ferrous sulfate solution was added to replete the iron. They used a Luria-Bertani medium at 30 C for the aerobic culturing and supplemented this medium with 10mM lactate and an electron acceptor for the anaerobic culturing. (14) |
| **To test the iron reduction rate, cells were grown anaerobically to mid-log phase in the LB medium along with 10mM fumarate and 10mM lactate. They were transferred to a solution of 5mL LB medium, 10mM lactate, and 10mM Fe(III) dioxide. They then performed the ferrozine assay. (14). | | **To test the iron reduction rate, cells were grown anaerobically to mid-log phase in the LB medium along with 10mM fumarate and 10mM lactate. They were transferred to a solution of 5mL LB medium, 10mM lactate, and 10mM Fe(III) dioxide. They then performed the ferrozine assay. (14). |
− | **For the microarray portion of the experiment, four biological replicates were grown in the LB medium. 2,2’-dipyridyl was added at concentration of 160 M, followed by ferrous sulfate after 60 minutes. They then centrifuged to allow for RNA extraction. | + | **For the microarray portion of the experiment, four biological replicates were grown in the LB medium. 2,2’-dipyridyl was added at concentration of 160 micro-M, followed by ferrous sulfate after 60 minutes. They then centrifuged to allow for RNA extraction. |
| *Briefly state the result shown in each of the figures and tables. | | *Briefly state the result shown in each of the figures and tables. |
Exception encountered, of type "Error"
[17fd9a1b] /biodb/fall2015/index.php?diff=prev&oldid=6210&title=Emilysimso_Week_11 Error from line 434 of /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php: Call to undefined function each()
Backtrace:
#0 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(544): DiffEngine->diag()
#1 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(344): DiffEngine->compareSeq()
#2 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(227): DiffEngine->diffLocal()
#3 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(721): DiffEngine->diff()
#4 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(859): Diff->__construct()
#5 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(980): MappedDiff->__construct()
#6 /apps/xmlpipedb/biodb/fall2015/includes/diff/TableDiffFormatter.php(194): WordLevelDiff->__construct()
#7 /apps/xmlpipedb/biodb/fall2015/includes/diff/DiffFormatter.php(140): TableDiffFormatter->changed()
#8 /apps/xmlpipedb/biodb/fall2015/includes/diff/DiffFormatter.php(82): DiffFormatter->block()
#9 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(888): DiffFormatter->format()
#10 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(802): DifferenceEngine->generateTextDiffBody()
#11 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(733): DifferenceEngine->generateContentDiffBody()
#12 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(662): DifferenceEngine->getDiffBody()
#13 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(632): DifferenceEngine->getDiff()
#14 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(453): DifferenceEngine->showDiff()
#15 /apps/xmlpipedb/biodb/fall2015/includes/page/Article.php(795): DifferenceEngine->showDiffPage()
#16 /apps/xmlpipedb/biodb/fall2015/includes/page/Article.php(506): Article->showDiffPage()
#17 /apps/xmlpipedb/biodb/fall2015/includes/actions/ViewAction.php(44): Article->view()
#18 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(395): ViewAction->show()
#19 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(273): MediaWiki->performAction()
#20 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(566): MediaWiki->performRequest()
#21 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(414): MediaWiki->main()
#22 /apps/xmlpipedb/biodb/fall2015/index.php(44): MediaWiki->run()
#23 {main}