Difference between revisions of "Troque Week 12"

Revision as of 00:01, 20 November 2015

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UniProt XML:

GO-OBO XML:

GOA:

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 {{Template:Troque}}
+== Things to note ==
+* Taxonomy ID: 623
+* UP000001006
+* Database name in PostGreSQL: Shigella flexneri 20151911
+* Version of GenMAPP Builder: ''' gmbuilder-3.0.0-build-5 '''
+* UniProt Link: [http://www.uniprot.org/uniprot/?query=proteome:UP000001006 | Click here].
+* GO-OBO: [http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz | Click here to download].
+* GOA: [http://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/ | Click here and use CTRL+F to find "103.S_flexneri_301.goa"]
+== Importing into PostGreSQL ==
+UniProt XML:
+* Elapsed time: 4.48 minutes
+GO-OBO XML:
+* Elapsed time: 7.00 minutes
+* Note: Additional processing window appeared and I clicked on it:
+** 4.99 minutes
+GOA:
+* Elapsed time: 0.06 minutes
+== Exporting to GenMAPP ==
+* Elapsed time: (TBD)
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