Difference between revisions of "Troque Week 12"
From LMU BioDB 2015
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* Database name in PostGreSQL: Shigella flexneri 20151911 | * Database name in PostGreSQL: Shigella flexneri 20151911 | ||
* Version of GenMAPP Builder: ''' gmbuilder-3.0.0-build-5 ''' | * Version of GenMAPP Builder: ''' gmbuilder-3.0.0-build-5 ''' | ||
| − | * UniProt Link: [http://www.uniprot.org/uniprot/?query=proteome:UP000001006 | + | * UniProt Link: [http://www.uniprot.org/uniprot/?query=proteome:UP000001006 Click here]. |
| − | * GO-OBO: [http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz | + | * GO-OBO: [http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz Click here to download]. |
| − | * GOA: [http://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/ | + | * GOA: [http://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/ Click here and use CTRL+F to find "103.S_flexneri_301.goa"] |
== Importing into PostGreSQL == | == Importing into PostGreSQL == | ||
Revision as of 00:01, 20 November 2015
Contents
Things to note
- Taxonomy ID: 623
- UP000001006
- Database name in PostGreSQL: Shigella flexneri 20151911
- Version of GenMAPP Builder: gmbuilder-3.0.0-build-5
- UniProt Link: Click here.
- GO-OBO: Click here to download.
- GOA: Click here and use CTRL+F to find "103.S_flexneri_301.goa"
Importing into PostGreSQL
UniProt XML:
- Elapsed time: 4.48 minutes
GO-OBO XML:
- Elapsed time: 7.00 minutes
- Note: Additional processing window appeared and I clicked on it:
- 4.99 minutes
GOA:
- Elapsed time: 0.06 minutes
Exporting to GenMAPP
- Elapsed time: (TBD)
Assignment Links
Weekly Assignments
- Week 1
- Week 2
- Week 3
- Week 4
- Week 5
- Week 6
- Week 7
- Week 8
- Week 9
- Week 10
- Week 11
- Week 12
- No Week 13 Assignment
- Week 14
- Week 15
Individual Journal Entries
- Week 1 - This is technically the user page.
- Week 2
- Week 3
- Week 4
- Week 5
- Week 6
- Week 7
- Week 8
- Week 9
- Week 10
- Week 11
- Week 12
- No Week 13 Assignment
- Week 14
- Week 15
