Difference between revisions of "Emilysimso Week 12"
From LMU BioDB 2015
Emilysimso (Talk | contribs) (Started uploading files) |
Emilysimso (Talk | contribs) (→Files: added first raw data edits) |
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==Files== | ==Files== | ||
| + | ===Choosing Appropriate Columns=== | ||
| + | *Downloaded each raw data file | ||
| + | *Opened it using Xcel | ||
| + | *Deleted unnecessary information at the top of the raw data tab | ||
| + | *Created new tab with "Needed Columns" label | ||
| + | *Transferred columns G, H, K, and L to this tab | ||
| + | *Saved the file as a .xlsx file and uploaded to the wiki | ||
| + | |||
| + | |||
*F1_1_Cy3: [[File:GSM496756 MR-1 F1 1 Cy3.xlsx]] | *F1_1_Cy3: [[File:GSM496756 MR-1 F1 1 Cy3.xlsx]] | ||
*F1_1_Cy5: [[File:GSM496756 MR-1 F1 1 Cy5.xlsx]] | *F1_1_Cy5: [[File:GSM496756 MR-1 F1 1 Cy5.xlsx]] | ||
| Line 35: | Line 44: | ||
*F10_4_Cy5: [[File:GSM496767 MR-1 F10 4 Cy5.xlsx]] | *F10_4_Cy5: [[File:GSM496767 MR-1 F10 4 Cy5.xlsx]] | ||
*F20_1_Cy3: [[File:GSM496768 MR-1 F20 1 Cy3.xlsx]] | *F20_1_Cy3: [[File:GSM496768 MR-1 F20 1 Cy3.xlsx]] | ||
| + | *F20_1_Cy5: [[File:GSM496768 MR-1 F20 1 Cy5.xlsx]] | ||
| + | *F20_2_Cy3: [[File:GSM496769 MR-1 F20 2 Cy3.xlsx]] | ||
| + | *F20_2_Cy5: [[File:GSM496769 MR-1 F20 2 Cy5.xlsx]] | ||
| + | *F20_3_Cy3: [[File:GSM496770 MR-1 F20 3 Cy3.xlsx]] | ||
| + | *F20_3_Cy5: [[File:GSM496770 MR-1 F20 3 Cy5.xlsx]] | ||
| + | *F20_4_Cy3: [[File:GSM496771 MR-1 F20 4 Cy3.xlsx]] | ||
| + | *F20_4:Cy5: [[File:GSM496771 MR-1 F20 4 Cy5.xlsx]] | ||
| + | *F40_1_Cy3: [[File:GSM496772 MR-1 F40 1 Cy3.xlsx]] | ||
| + | *F40_1_Cy5: [[File:GSM496772 MR-1 F40 1 Cy5.xlsx]] | ||
| + | *F40_2_Cy3: [[File:GSM496773 MR-1 F40 2 Cy3.xlsx]] | ||
| + | *F40_2_Cy5: [[File:GSM496773 MR-1 F40 2 Cy5.xlsx]] | ||
| + | *F40_3_Cy3: [[File:GSM496774 MR-1 F40 3 Cy3.xlsx]] | ||
| + | *F40_3_Cy5: [[File:GSM496774 MR-1 F40 3 Cy5.xlsx]] | ||
| + | *F40_4_Cy3: [[File:GSM496775 MR-1 F40 4 Cy3.xlsx]] | ||
| + | *F40_4:Cy5: [[File:GSM496775 MR-1 F40 4 Cy5.xlsx]] | ||
| + | *F60_1_Cy3: [[File:GSM496776 MR-1 F60 1 Cy3.xlsx]] | ||
| + | *F60_1_Cy5: [[File:GSM496776 MR-1 F60 1 Cy5.xlsx]] | ||
| + | *F60_2_Cy3: [[File:GSM496777 MR-1 F60 2 Cy3.xlsx]] | ||
| + | *F60_2_Cy5: [[File:GSM496777 MR-1 F60 2 Cy5.xlsx]] | ||
| + | *F60_3_Cy3: [[File:GSM496778 MR-1 F60 3 Cy3.xlsx]] | ||
| + | *F60_3_Cy5: [[File:GSM496778 MR-1 F60 3 Cy5.xlsx]] | ||
| + | *F60_4_Cy3: [[File:GSM496779 MR-1 F60 4 Cy3.xlsx]] | ||
| + | *F60_4:Cy5: [[File:GSM496779 MR-1 F60 4 Cy5.xlsx]] | ||
Revision as of 04:59, 20 November 2015
Goals
- Normalize data, statistical analysis of raw data
File Notes
- Will work on all "F" files
- 52 chips total - 104 files (one for Cy3, one for Cy5)
- sdrf file has 208 - duplicates
- Need columns G, K, L, H
- Log2 (Cy5 signal median-Cy5 signal background / Cy3 signal median - Cy3 signal background)
Files
Choosing Appropriate Columns
- Downloaded each raw data file
- Opened it using Xcel
- Deleted unnecessary information at the top of the raw data tab
- Created new tab with "Needed Columns" label
- Transferred columns G, H, K, and L to this tab
- Saved the file as a .xlsx file and uploaded to the wiki
- F1_1_Cy3: File:GSM496756 MR-1 F1 1 Cy3.xlsx
- F1_1_Cy5: File:GSM496756 MR-1 F1 1 Cy5.xlsx
- F1_2_Cy3: File:GSM496757 MR-1 F1 2 Cy3.xlsx
- F1_2_Cy5: File:GSM496757 MR-1 F1 2 Cy5.xlsx
- F1_3_Cy3: File:GSM496758 MR-1 F1 3 Cy3.xlsx
- F1_3_Cy5: File:GSM496758 MR-1 F1 3 Cy5.xlsx
- F1_4_Cy3: File:GSM496759 MR-1 F1 4 Cy3.xlsx
- F1_4_Cy5: File:GSM496759 MR-1 F1 4 Cy5.xlsx
- F5_1_Cy3: File:GSM496760 MR-1 F5 1 Cy3.xlsx
- F5_1_Cy5: File:GSM496760 MR-1 F5 1 Cy5.xlsx
- F5_2_Cy3: File:GSM496761 MR-1 F5 2 Cy3.xlsx
- F5_2_Cy5: File:GSM496761 MR-1 F5 2 Cy5.xlsx
- F5_3_Cy3: File:GSM496762 MR-1 F5 3 Cy3.xlsx
- F5_3_Cy5: File:GSM496762 MR-1 F5 3 Cy5.xlsx
- F5_4_Cy3: File:GSM496763 MR-1 F5 4 Cy3.xlsx
- F5_4_Cy5: File:GSM496763 MR-1 F5 4 Cy5.xlsx
- F10_1_Cy3: File:GSM496764 MR-1 F10 1 Cy3.xlsx
- F10_1_Cy5: File:GSM496764 MR-1 F10 1 Cy5.xlsx
- F10_2_Cy3: File:GSM496765 MR-1 F10 2 Cy3.xlsx
- F10_2_Cy5: File:GSM496765 MR-1 F10 2 Cy5.xlsx
- F10_3_Cy3: File:GSM496766 MR-1 F10 3 Cy3.xlsx
- F10_3_Cy5: File:GSM496766 MR-1 F10 3 Cy5.xlsx
- F10_4_Cy3: File:GSM496767 MR-1 F10 4 Cy3.xlsx
- F10_4_Cy5: File:GSM496767 MR-1 F10 4 Cy5.xlsx
- F20_1_Cy3: File:GSM496768 MR-1 F20 1 Cy3.xlsx
- F20_1_Cy5: File:GSM496768 MR-1 F20 1 Cy5.xlsx
- F20_2_Cy3: File:GSM496769 MR-1 F20 2 Cy3.xlsx
- F20_2_Cy5: File:GSM496769 MR-1 F20 2 Cy5.xlsx
- F20_3_Cy3: File:GSM496770 MR-1 F20 3 Cy3.xlsx
- F20_3_Cy5: File:GSM496770 MR-1 F20 3 Cy5.xlsx
- F20_4_Cy3: File:GSM496771 MR-1 F20 4 Cy3.xlsx
- F20_4:Cy5: File:GSM496771 MR-1 F20 4 Cy5.xlsx
- F40_1_Cy3: File:GSM496772 MR-1 F40 1 Cy3.xlsx
- F40_1_Cy5: File:GSM496772 MR-1 F40 1 Cy5.xlsx
- F40_2_Cy3: File:GSM496773 MR-1 F40 2 Cy3.xlsx
- F40_2_Cy5: File:GSM496773 MR-1 F40 2 Cy5.xlsx
- F40_3_Cy3: File:GSM496774 MR-1 F40 3 Cy3.xlsx
- F40_3_Cy5: File:GSM496774 MR-1 F40 3 Cy5.xlsx
- F40_4_Cy3: File:GSM496775 MR-1 F40 4 Cy3.xlsx
- F40_4:Cy5: File:GSM496775 MR-1 F40 4 Cy5.xlsx
- F60_1_Cy3: File:GSM496776 MR-1 F60 1 Cy3.xlsx
- F60_1_Cy5: File:GSM496776 MR-1 F60 1 Cy5.xlsx
- F60_2_Cy3: File:GSM496777 MR-1 F60 2 Cy3.xlsx
- F60_2_Cy5: File:GSM496777 MR-1 F60 2 Cy5.xlsx
- F60_3_Cy3: File:GSM496778 MR-1 F60 3 Cy3.xlsx
- F60_3_Cy5: File:GSM496778 MR-1 F60 3 Cy5.xlsx
- F60_4_Cy3: File:GSM496779 MR-1 F60 4 Cy3.xlsx
- F60_4:Cy5: File:GSM496779 MR-1 F60 4 Cy5.xlsx
