Difference between revisions of "Troque Week 12"

Revision as of 00:18, 22 November 2015

Things to note

• Taxonomy ID: 623
• UP000001006
• File management system: Wiki

Export Information

Version of GenMAPP Builder:

• gmbuilder-3.0.0-build-5

Computer on which export was run:

• Front of the room, 3rd computer from the right.

Postgres Database name:

• Shigella flexneri 20151911

UniProt XML filename (give filename and upload and link to compressed file):

• UniProt XML version (The version information can be found at the UniProt News Page): UniProt release 2015_11
• UniProt XML download link: Click here
• Time taken to import: 4.48 minutes
  • Note:

GO OBO-XML filename (give filename and upload and link to compressed file):

• GO OBO-XML version (The version information can be found in the file properties after the file downloaded from the GO Download page has been unzipped): Version created on 11/19/2015 (at 2:24 AM)
• GO OBO-XML download link: Click here to download.
• Time taken to import: 7.00 minutes
• Time taken to process: 4.99 minutes
  • Note:

GOA filename (give filename and upload and link to compressed file):

• GOA version (News on this page records past releases; current information can be found in the Last modified field on the FTP site): Version released on .
• GOA download link: Click here to download.
• Time taken to import: 0.06 minutes
  • Note:

Name of .gdb file (give filename and upload and link to compressed file):

• Time taken to export: 1 Hours, 32 Minutes, 33 Seconds
  • Start time: 4:06:13 PM PM PDT
  • End time: 5:38:46 PM PDT
  • Note:

TallyEngine

• Run the TallyEngine in GenMAPP Builder and record the number of records for UniProt and GO in the XML data and in the Postgres databases.
  • Choose the menu item Tallies > Run XML and Database Tallies for UniProt and GO...
  • Choose the UniProt and GO OBO XML files that was uploaded from the previous sections of this assignment.
  • Here is the screenshot of the tally result:

Assignment Links

Weekly Assignments

• Week 1
• Week 2
• Week 3
• Week 4
• Week 5
• Week 6
• Week 7
• Week 8
• Week 9
• Week 10
• Week 11
• Week 12
• No Week 13 Assignment
• Week 14
• Week 15

Individual Journal Entries

• Week 1 - This is technically the user page.
• Week 2
• Week 3
• Week 4
• Week 5
• Week 6
• Week 7
• Week 8
• Week 9
• Week 10
• Week 11
• Week 12
• No Week 13 Assignment
• Week 14
• Week 15

Shared Journal Entries

• Week 1
• Week 2
• Week 3
• Week 4
• Week 5
• Week 6
• Week 7
• Week 8
• Week 9
• Week 10
• Week 11
• Week 12
• No Week 13 Assignment
• Week 14
• Week 15