Difference between revisions of "Blitvak Week 14"
From LMU BioDB 2015
(added modified command for match/psql 12/3) |
(added some more notes, 12/3) |
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| + | *BUILD 3 | ||
| + | *XML - 3.99 minutes | ||
| + | *OBO/XML- 5.77 minutes (1), 4.06 minutes (2) | ||
| + | *GOA - 0.05 minutes | ||
| + | |||
| + | START: 7:24 p | ||
Revision as of 03:20, 4 December 2015
12/1
- Goals: Consult with Anu to make modifications to TallyEngine/GenMAPP (share initial export results)
- Reacquaint with using Excel to track IDs/discrepant IDs (Using Microsoft Excel to Compare ID Lists)
- pgAdmin III work will be involved, in conjunction with Excel, for the new modified .gdb: Will use:
select value from genenametype where type = 'ordered locus';and will export (and use with Excel)
B.cenocepacia_J2315_20151201_gmbuilder-genialomics-20151201
ORF not ORDEREDLOCUS
- XML - 3.72 minutes
- OBO/XML - 5.25 minutes
- Processing: 3.91 minutes
- GOA - 0.04 minutes
EXPORT START: 10:27 PM
END: 2:49 AM
12/3
'p?BCA[A-Z]?[0-9][0-9][0-9][A-Z]?[0-9]?[A-Z, a-z]?';
MODIFIED: 'p?BCA[M,S,L][0-9][0-9][0-9][A,a]?[0-9]?[A-Z, a-z]?';
first object xml editor
6 IDs with problems
bca199f
- BUILD 3
- XML - 3.99 minutes
- OBO/XML- 5.77 minutes (1), 4.06 minutes (2)
- GOA - 0.05 minutes
START: 7:24 p
