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| *Truncated Gene Database Testing Report: [[Gene Database Testing Report- cw20151201]] | | *Truncated Gene Database Testing Report: [[Gene Database Testing Report- cw20151201]] |
| GenMAPP Builder version cw20151203: [[File:Dist cw20151203.zip]] | | GenMAPP Builder version cw20151203: [[File:Dist cw20151203.zip]] |
− | *Build Details: Includes ''Bordetella pertussis'' custom class expanded to include ORF listing in export. | + | *Build Details: Includes ''Bordetella pertussis'' custom class expanded to include ORF listings in exports. |
| *Gene Database Testing Report: [[Gene Database Testing Report- cw20151203]] | | *Gene Database Testing Report: [[Gene Database Testing Report- cw20151203]] |
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| # When this process completed, I right-clicked on the ''gmbuilder'' project folder and chose '''Refresh''' from the menu that appeared. | | # When this process completed, I right-clicked on the ''gmbuilder'' project folder and chose '''Refresh''' from the menu that appeared. |
| # A ''dist'' folder was now visible inside the ''gmbuilder'' project folder. | | # A ''dist'' folder was now visible inside the ''gmbuilder'' project folder. |
− | #* This corresponded to mypersonally-built copy of ''GenMAPP Builder''. | + | #* This corresponded to my personally-built copy of ''GenMAPP Builder''. |
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− | To compress the new version of GenMAPP Builder and export it, I navigated to the ''xmlpipedb'' folder present on my coding computer. Within this folder, I opened ''gmbuilder'' and compressed the ''dist''. This compressed file was then uploaded to the wiki here: [[File:Dist cw20151201.zip]]. | + | To compress the new version of GenMAPP Builder and export it, I navigated to the ''xmlpipedb'' folder present on my coding computer. Within this folder, I opened ''gmbuilder'' and compressed the ''dist'' folder. This compressed file was then uploaded to the wiki here: [[File:Dist cw20151201.zip]]. |
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| === Testing the New Build of GenMAPP Builder === | | === Testing the New Build of GenMAPP Builder === |
− | To test this new build, I downloaded the new distribution ([[File:Dist cw20151201.zip]] on the lab computer and performed the following: | + | To test this new build, I downloaded the new distribution ([[File:Dist cw20151201.zip]]) on the lab computer and performed the following: |
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| *I ran PostgreSQL (''pgAdmin III'') and created a new database: ''bpertussis_cw20151201_gmb3build5''. | | *I ran PostgreSQL (''pgAdmin III'') and created a new database: ''bpertussis_cw20151201_gmb3build5''. |
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| ===ID inconsistencies=== | | ===ID inconsistencies=== |
Exception encountered, of type "Error"
[c9c07743] /biodb/fall2015/index.php?diff=prev&oldid=7352&title=Bklein7_Week_14 Error from line 434 of /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php: Call to undefined function each()
Backtrace:
#0 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(544): DiffEngine->diag()
#1 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(344): DiffEngine->compareSeq()
#2 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(227): DiffEngine->diffLocal()
#3 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(721): DiffEngine->diff()
#4 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(859): Diff->__construct()
#5 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(980): MappedDiff->__construct()
#6 /apps/xmlpipedb/biodb/fall2015/includes/diff/TableDiffFormatter.php(194): WordLevelDiff->__construct()
#7 /apps/xmlpipedb/biodb/fall2015/includes/diff/DiffFormatter.php(140): TableDiffFormatter->changed()
#8 /apps/xmlpipedb/biodb/fall2015/includes/diff/DiffFormatter.php(82): DiffFormatter->block()
#9 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(888): DiffFormatter->format()
#10 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(802): DifferenceEngine->generateTextDiffBody()
#11 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(733): DifferenceEngine->generateContentDiffBody()
#12 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(662): DifferenceEngine->getDiffBody()
#13 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(632): DifferenceEngine->getDiff()
#14 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(453): DifferenceEngine->showDiff()
#15 /apps/xmlpipedb/biodb/fall2015/includes/page/Article.php(795): DifferenceEngine->showDiffPage()
#16 /apps/xmlpipedb/biodb/fall2015/includes/page/Article.php(506): Article->showDiffPage()
#17 /apps/xmlpipedb/biodb/fall2015/includes/actions/ViewAction.php(44): Article->view()
#18 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(395): ViewAction->show()
#19 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(273): MediaWiki->performAction()
#20 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(566): MediaWiki->performRequest()
#21 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(414): MediaWiki->main()
#22 /apps/xmlpipedb/biodb/fall2015/index.php(44): MediaWiki->run()
#23 {main}