Difference between revisions of "Bordetella Pertussis GenMAPP Analysis Deliverables"
From LMU BioDB 2015
Lenaolufson (Talk | contribs) (→Group Files and Datasets: uploaded the exceptions files generated from genmapp) |
Lenaolufson (Talk | contribs) (→Group Files and Datasets: uploaded the two criterion files from genmapp) |
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* GenMAPP Expression Dataset file (''.gex''): [[File:Bpertussis expressiondataset cw20151213.gex]] | * GenMAPP Expression Dataset file (''.gex''): [[File:Bpertussis expressiondataset cw20151213.gex]] | ||
* Exceptions file of data imported into GenMAPP (''.EX.txt''): [[File:Bpertussis expressiondataset exceptions cw20151213.EX.txt]] | * Exceptions file of data imported into GenMAPP (''.EX.txt''): [[File:Bpertussis expressiondataset exceptions cw20151213.EX.txt]] | ||
| − | * Raw MAPPFinder results files (''-GO.txt'') | + | * Raw MAPPFinder results files (''-GO.txt''): |
| + | ** [[File:Bpertussis mappfinderresults cw20151213-criterion0-GO.txt]] | ||
| + | ** [[File:Bpertussis mappfinderresults cw20151213-criterion1-GO.txt]] | ||
* ''.gmf'' file | * ''.gmf'' file | ||
* Filtered MAPPFinder Results (''.xls'' or ''.xlsx'') | * Filtered MAPPFinder Results (''.xls'' or ''.xlsx'') | ||
Revision as of 07:35, 14 December 2015
Group Files and Datasets
- GenMAPP Gene Database for assigned species (.gdb): File:Bpertussis-std cw20151210.zip
- ReadMe file to accompany the Gene Database (.pdf)
- Sample ReadMe in Word format: ReadMe_Vc-Std_External_20131122.zip
- Sample ReadMe in markdown (a work in progress)
- Include Gene Database Schema diagram in ReadMe
- Sample schema in Adobe Illustrator format: Vibrio_schema_20101022.zip
- Gene Database Testing Report for final submitted Gene Database (print from wiki to .pdf file)
- Processed and analyzed DNA microarray dataset (.xls or .xlsx): File:Bpertussis compiledrawdata cw20151208.xlsx
- Data file used for import into GenMAPP (.txt or .csv): File:Bpertussis compiledrawdata cw20151208.txt
- GenMAPP Expression Dataset file (.gex): File:Bpertussis expressiondataset cw20151213.gex
- Exceptions file of data imported into GenMAPP (.EX.txt): File:Bpertussis expressiondataset exceptions cw20151213.EX.txt
- Raw MAPPFinder results files (-GO.txt):
- .gmf file
- Filtered MAPPFinder Results (.xls or .xlsx)
- Sample MAPP file of a relevant biological pathway for your species (.mapp)
- Group Report describing the creation of the Gene Database and the biological analysis of the data (.doc, .docx, or .pdf)
- PowerPoint presentation (.ppt, .pptx, or .pdf, given on Tuesday, December 15)
