Difference between revisions of "Bordetella Pertussis GenMAPP Analysis Deliverables"
From LMU BioDB 2015
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== Group Files and Datasets == | == Group Files and Datasets == | ||
| − | * GenMAPP Gene Database for assigned species | + | * GenMAPP Gene Database for assigned species: [[File:Bpertussis-std cw20151210.zip]] |
| − | * ReadMe file to accompany the Gene Database | + | * '''ReadMe file to accompany the Gene Database''' |
| − | ** Include Gene Database Schema diagram in ReadMe | + | ** '''Include Gene Database Schema diagram in ReadMe''' |
| − | * Gene Database Testing Report for final submitted Gene Database | + | * Gene Database Testing Report for final submitted Gene Database: [[File:Gdb testingreport cw20151210.pdf]] |
| − | * Processed and analyzed DNA microarray dataset | + | * Processed and analyzed DNA microarray dataset: [[File:Bpertussis compiledrawdata cw20151208.xlsx]] |
| − | * Data file used for import into GenMAPP | + | * Data file used for import into GenMAPP: [[File:Bpertussis compiledrawdata cw20151208.txt]] |
| − | * GenMAPP Expression Dataset file | + | * GenMAPP Expression Dataset file: [[File:Bpertussis expressiondataset cw20151213.gex]] |
| − | * Exceptions file of data imported into GenMAPP | + | * Exceptions file of data imported into GenMAPP: [[File:Bpertussis expressiondataset exceptions cw20151213.EX.txt]] |
| − | * Raw MAPPFinder results files | + | * Raw MAPPFinder results files: |
| − | ** [[File:Bpertussis mappfinderresults cw20151213-criterion0-GO.txt]] | + | ** [[File:Bpertussis mappfinderresults cw20151213-criterion0-GO.txt|Increased]] |
| − | ** [[File:Bpertussis mappfinderresults cw20151213-criterion1-GO.txt]] | + | ** [[File:Bpertussis mappfinderresults cw20151213-criterion1-GO.txt|Decreased]] |
* ''.gmf'' file: [[File:Bpertussis compiledrawdata cw20151213.gmf]] | * ''.gmf'' file: [[File:Bpertussis compiledrawdata cw20151213.gmf]] | ||
| − | * Filtered MAPPFinder Results | + | * Filtered MAPPFinder Results: |
| − | ** [[File:Bpertussis mappfinderresults filtered cw20151213-Criterion0-GO.xlsx]] | + | ** [[File:Bpertussis mappfinderresults filtered cw20151213-Criterion0-GO.xlsx|Increased]] |
| − | ** [[File:Bpertussis mappfinderresults filtered cw20151213-Criterion1-GO.xlsx]] | + | ** [[File:Bpertussis mappfinderresults filtered cw20151213-Criterion1-GO.xlsx|Decreased]] |
| − | * Sample MAPP file of a relevant biological pathway for your species | + | * Sample MAPP file of a relevant biological pathway for your species: [[File:Bpertussis ribosomepathway cw20151215.mapp]] |
| − | * [[Gene Database Project Deliverables#Group Report | Group Report]] describing the creation of the Gene Database and the biological analysis (''.doc'', ''.docx'', or ''.pdf'') | + | * '''[[Gene Database Project Deliverables#Group Report | Group Report]] describing the creation of the Gene Database and the biological analysis (''.doc'', ''.docx'', or ''.pdf'')''' |
* PowerPoint presentation: [[File:Bpertussis findings powerpoint.pdf]] | * PowerPoint presentation: [[File:Bpertussis findings powerpoint.pdf]] | ||
==Team Information & Links== | ==Team Information & Links== | ||
{{Template:Class Whoopers}} | {{Template:Class Whoopers}} | ||
Revision as of 20:37, 18 December 2015
Contents
Group Files and Datasets
- GenMAPP Gene Database for assigned species: File:Bpertussis-std cw20151210.zip
- ReadMe file to accompany the Gene Database
- Include Gene Database Schema diagram in ReadMe
- Gene Database Testing Report for final submitted Gene Database: File:Gdb testingreport cw20151210.pdf
- Processed and analyzed DNA microarray dataset: File:Bpertussis compiledrawdata cw20151208.xlsx
- Data file used for import into GenMAPP: File:Bpertussis compiledrawdata cw20151208.txt
- GenMAPP Expression Dataset file: File:Bpertussis expressiondataset cw20151213.gex
- Exceptions file of data imported into GenMAPP: File:Bpertussis expressiondataset exceptions cw20151213.EX.txt
- Raw MAPPFinder results files:
- .gmf file: File:Bpertussis compiledrawdata cw20151213.gmf
- Filtered MAPPFinder Results:
- Sample MAPP file of a relevant biological pathway for your species: File:Bpertussis ribosomepathway cw20151215.mapp
- Group Report describing the creation of the Gene Database and the biological analysis (.doc, .docx, or .pdf)
- PowerPoint presentation: File:Bpertussis findings powerpoint.pdf
Team Information & Links
GenMAPP Analysis of Bordetella pertussis Microarray Data
| Gene Database Project Links | |||||||
|---|---|---|---|---|---|---|---|
| Overview | Deliverables | Reference Format | Guilds | Project Manager | GenMAPP User | Quality Assurance | Coder |
| Teams | Heavy Metal HaterZ | The Class Whoopers | GÉNialOMICS | Oregon Trail Survivors | |||
Journal Entries
| Class Whoopers Individual Journal Entries | ||||
|---|---|---|---|---|
| Brandon Klein | Week 11 | Week 12 | Week 14 | Week 15 |
| Lena Olufson | Week 11 | Week 12 | Week 14 | Week 15 |
| Mahrad Saeedi | Week 11 | Week 12 | Week 14 | Week 15 |
| Team Entries | Week 11 | Week 12 | Week 14 | Week 15 |
Group Members
- Project Manager & Coder: Brandon Klein
- Quality Assurance: Mahrad Saeedi
- GenMAPP User: Lena Olufson
- Team Page
