Difference between revisions of "Bordetella Pertussis GenMAPP Analysis Deliverables"
From LMU BioDB 2015
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* GenMAPP Gene Database for assigned species: [[File:Bpertussis-std cw20151210.zip]] | * GenMAPP Gene Database for assigned species: [[File:Bpertussis-std cw20151210.zip]] | ||
* ReadMe file to accompany the Gene Database: [[File:ReadMe bpertussis-std cw20151210.docx]] | * ReadMe file to accompany the Gene Database: [[File:ReadMe bpertussis-std cw20151210.docx]] | ||
| − | ** [[ | + | ** [[Media:Bpertussis genedatabase schema cw20151210.jpg|Gene Database Schema diagram (also included in ReadMe)]] |
* Gene Database Testing Report for final submitted Gene Database: [[File:Gdb testingreport cw20151210.pdf]] | * Gene Database Testing Report for final submitted Gene Database: [[File:Gdb testingreport cw20151210.pdf]] | ||
* Processed and analyzed DNA microarray dataset: [[File:Bpertussis compiledrawdata cw20151208.xlsx]] | * Processed and analyzed DNA microarray dataset: [[File:Bpertussis compiledrawdata cw20151208.xlsx]] | ||
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* Exceptions file of data imported into GenMAPP: [[File:Bpertussis expressiondataset exceptions cw20151213.EX.txt]] | * Exceptions file of data imported into GenMAPP: [[File:Bpertussis expressiondataset exceptions cw20151213.EX.txt]] | ||
* Raw MAPPFinder results files: | * Raw MAPPFinder results files: | ||
| − | ** [[File:Bpertussis mappfinderresults cw20151218- | + | ** [[File:Bpertussis mappfinderresults cw20151218-Criterion0-GO.txt|Increased]] |
| − | ** [[File:Bpertussis mappfinderresults cw20151218- | + | ** [[File:Bpertussis mappfinderresults cw20151218-Criterion1-GO.txt|Decreased]] |
* ''.gmf'' file: [[File:Bpertussis compiledrawdata cw20151213.gmf]] | * ''.gmf'' file: [[File:Bpertussis compiledrawdata cw20151213.gmf]] | ||
* Filtered MAPPFinder Results: | * Filtered MAPPFinder Results: | ||
| − | ** [[ | + | ** [[Media:Bpertussis mappfinderresults cw20151218-Criterion0-GO - Filtered.xlsx|Increased]] |
| − | ** [[ | + | ** [[Media:Bpertussis mappfinderresults cw20151218-Criterion1-GO - Filtered.xlsx|Decreased]] |
* Sample MAPP file of a relevant biological pathway for your species: [[File:Bpertussis ribosomepathway cw20151215.mapp]] | * Sample MAPP file of a relevant biological pathway for your species: [[File:Bpertussis ribosomepathway cw20151215.mapp]] | ||
* '''[[Gene Database Project Deliverables#Group Report | Group Report]] describing the creation of the Gene Database and the biological analysis (''.doc'', ''.docx'', or ''.pdf'')''' | * '''[[Gene Database Project Deliverables#Group Report | Group Report]] describing the creation of the Gene Database and the biological analysis (''.doc'', ''.docx'', or ''.pdf'')''' | ||
Revision as of 21:43, 18 December 2015
Contents
Group Files and Datasets
- GenMAPP Gene Database for assigned species: File:Bpertussis-std cw20151210.zip
- ReadMe file to accompany the Gene Database: File:ReadMe bpertussis-std cw20151210.docx
- Gene Database Testing Report for final submitted Gene Database: File:Gdb testingreport cw20151210.pdf
- Processed and analyzed DNA microarray dataset: File:Bpertussis compiledrawdata cw20151208.xlsx
- Data file used for import into GenMAPP: File:Bpertussis compiledrawdata cw20151208.txt
- GenMAPP Expression Dataset file: File:Bpertussis expressiondataset cw20151213.gex
- Exceptions file of data imported into GenMAPP: File:Bpertussis expressiondataset exceptions cw20151213.EX.txt
- Raw MAPPFinder results files:
- .gmf file: File:Bpertussis compiledrawdata cw20151213.gmf
- Filtered MAPPFinder Results:
- Sample MAPP file of a relevant biological pathway for your species: File:Bpertussis ribosomepathway cw20151215.mapp
- Group Report describing the creation of the Gene Database and the biological analysis (.doc, .docx, or .pdf)
- PowerPoint presentation: File:Bpertussis findings powerpoint.pdf
Team Information & Links
GenMAPP Analysis of Bordetella pertussis Microarray Data
| Gene Database Project Links | |||||||
|---|---|---|---|---|---|---|---|
| Overview | Deliverables | Reference Format | Guilds | Project Manager | GenMAPP User | Quality Assurance | Coder |
| Teams | Heavy Metal HaterZ | The Class Whoopers | GÉNialOMICS | Oregon Trail Survivors | |||
Journal Entries
| Class Whoopers Individual Journal Entries | ||||
|---|---|---|---|---|
| Brandon Klein | Week 11 | Week 12 | Week 14 | Week 15 |
| Lena Olufson | Week 11 | Week 12 | Week 14 | Week 15 |
| Mahrad Saeedi | Week 11 | Week 12 | Week 14 | Week 15 |
| Team Entries | Week 11 | Week 12 | Week 14 | Week 15 |
Group Members
- Project Manager & Coder: Brandon Klein
- Quality Assurance: Mahrad Saeedi
- GenMAPP User: Lena Olufson
- Team Page
