Heavy Metal HaterZ

From LMU BioDB 2015
Revision as of 06:01, 9 November 2015 by Emilysimso (Talk | contribs) (Our Genome Paper: answered questions)

Jump to: navigation, search
HeavyMetal.jpg


Shewanella Oneidensis

Gene Database Project Links
Overview Deliverables Reference Format Guilds Project Manager GenMAPP User Quality Assurance Coder
Teams Heavy Metal HaterZ The Class Whoopers GÉNialOMICS Oregon Trail Survivors

Group Members

Week 10 Assignment : Annotated Bibliography

Individual Biographies

Our Genome Paper

  • APA citation: Heidelberg, J. F., Paulsen, I. T., Nelson, K. E., Gaidos, E. J., Nelson, W. C., Read, T. D., ... & Fraser, C. M. (2002). Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis. Nature biotechnology, 20(11), 1118-1123.
  • PubMed abstract
  • PubMedCentral article:
  • Full text from publisher website
  • PDF file from publisher website
  • Article rights: publisher owns the copyright
  • Publishing organization of article: Nature Publishing Group, which is a for-profit organization
  • Print or online only: online only
  • Has LMU paid subscription: no
  • How many articles does this article cite?
    • 48 other articles
  • How many articles cite this article?
    • 581 articles cite this article
  • Based on the titles and abstracts of the papers, what type of research directions have been taken now that the genome for that organism has been sequenced?
    • Article titles
      • Environmental genome shotgun sequencing of the Sargasso Sea
      • Dissimilatory Fe (iii) and Mn (iv) reduction
      • Deciphering the evolution and metabolism of an anammox bacterium from a community genome
      • Microorganisms pumping iron: anaerobic microbial iron oxidation and reduction
      • Genome of Geobacter sulfurreducens: metal reduction in subsurface environments
    • Based upon these titles, the original paper has been used for the genomes of other organisms and to look at the interaction of the original genome with various metals
    • This could be useful for looking at how organisms are impacted by the environment, especially if humans are influencing the metal composition of the soil.

List of Microarray Papers

  • We will rank these eventually.
  • Papers can be found at this link
  • E-GEOD-15334 - Emily
  • E-GEOD-21044 - Josh
  • E-GEOD-15657 - Ron
  • E-MTAB-266 - Mary
  • E-MTAB-319 - Mary