Heavy Metal HaterZ Files
From LMU BioDB 2015
Revision as of 23:30, 13 December 2015 by Emilysimso (Talk | contribs) (→MAPPFinder Documents: added .txt file)
Contents
All Files
- All files will be listed here.
- Appropriate way to title files:
- FileName_YYYYMMDD_HMH
Initial Flow Chart
- Initial flow chart for experimental design - File:Experimental Design Flow Chart 20151115 HMH.pptx
Journal Club Presentation Power Points
- Microarray Paper Presentation - File:SoMicroarrayPaperPresentation 20151117 HMH.pptx
- Genome Paper Presentation - File:GenomePPT 20151123 HMH.pdf
Data Processing Notes from Dr. Dahlquist
- Page 1 of Notes - Media:DrDDataProcessNotes1 20151119 HMH.JPG
- Page 2 of Notes - Media:DrDDataProcessNotes2 20151119 HMH.JPG
GenMapp Builder
Statistical Analysis Excel Sheets
- Prior to Splitting:
- After splitting, use this one:
- Following the splitting, averages taken and ttests done to data sets:
- File:StatisticalAnalysis Shewanella RARL 20151207 HMH.xlsx
- File:UpdatedCompiledRawData Shewanella RARL 20151201 ES HMH forsplitting.xlsx
- UpdatedCompiledRawData_Shewanella_RARL_20151201_ES_HMH_forsplitting_KD.xlsx
- I made corrections to Emily's file because there are 5408 genes, not 5408. I think that both files have the same results not and you can move on to the next step. — Kdahlquist (talk) 15:22, 9 December 2015 (PST)
- Ready for GenMAPP
- .txt file for GenMAPP
- Ranked List from MAPPFinder:
Sanity Check Table
MAPPFinder Documents
- gdb file - File:So-Std 20151201special.zip
- File:ColorSetforExpressionData F60C60 20151210 HMH.gex
- GenMAPP with all comparisons - File:FilesForComparison AllTrials WithGenMAPP 20151212 ES HMH.gex
- Filtered GO terms for increased - File:MAPPFINDER 20151212-Criterion0-GO 20151212 HMH.xlsx
- Filtered GO terms for decreased - File:MAPPFINDER 20151212-Criterion1-GO 20151212 HMH.xlsx
- Screenshots showing significant results - File:CompiledScreenShots 20151212 HMH.docx
