Week 4 E-notes Eyanosch

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Revision as of 23:13, 24 September 2015 by Eyanosch (Talk | contribs) (notes for week 4 assigment)

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3 command sequences

  • one for each question

so far for the first question

cat infA-E.coli-K12.txt. | grep "[ct]at[at]at" | grep "tt[gt]ac[at]" | sed "s/tttact/ <minus35box> & <\/minus35box> /g" | sed "s/cattat/ <minus 10box> & <\/minus10box> \n/" | sed "s/a/ <TSS>&<\/TSS>/" | sed "2s/gagg/ <RBS>&<\/RBS> /" | grep "aaaaggt.*gcctttt"

  • the only problem that I'm having is only the second line shows when I add the grep "aaaaggt.*gcctttt" at the end to find the hairpin loop
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