Anuvarsh Week 12

Electronic Lab Notebook

Goals

• Start an export in class
• Complete milestone 1: Version Control Setup
• Begin milestone 2: “Developer Rig” Setup and Initial As-Is Build

Thursday, November 19, 2015

• During the guild huddle with Dr. Dionisio, I was added to the lmu-bioinfomatics/xmlpipedb repository and created a branch called b-cenocepacia according to the species that my team is working on.
• After the guild meeting, I proceeded to the GenMAPP Builder Project Setup and Initial Build heading and completed the following:

GitHub Repository Clone Setup

1. cd to the desktop of my development computer (my laptop - MacBook Pro).
2. Cloned the repository:

   git clone https://github.com/lmu-bioinformatics/xmlpipedb.git

3. cd into the clone folder xmlpipedb:

   cd xmlpipedb

4. Switched to my branch:

   git checkout b-cenocepacia

5. I saw the following message:

   Branch b-cenocepacia set up to track remote branch b-cenocepacia from origin. Switched to a new branch 'b-cenocepacia'

Eclipse Workspace Setup

1. Ran Eclipse.
2. Selected Desktop/xmlpipedb when Eclipse asked me to select a workspace using Browse... and then clicked on Open followed by OK.
3. An introductory displace window appeared, and I clicked on the Workbench button (upper-right corner, with a 3D arrow for an icon).
4. My repository clone folder opened in the window with a tab titled Project Explorer on the left of the window.

Other Links

User Page: Anindita Varshneya
Class Page: BIOL/CMSI 367: Biological Databases, Fall 2015
Group Page: GÉNialOMICS

Assignment Pages

Week 1 Assignment
Week 2 Assignment
Week 3 Assignment
Week 4 Assignment
Week 5 Assignment
Week 6 Assignment
Week 7 Assignment
Week 8 Assignment
Week 9 Assignment
Week 10 Assignment
Week 11 Assignment
Week 12 Assignment
No Week 13 Assignment
Week 14 Assignment
Week 15 Assignment

Individual Journals

Individual Journal Week 2
Individual Journal Week 3
Individual Journal Week 4
Individual Journal Week 5
Individual Journal Week 6
Individual Journal Week 7
Individual Journal Week 8
Individual Journal Week 9
Individual Journal Week 10
Individual Journal Week 11
Individual Journal Week 12
Individual Journal Week 14
Individual Journal Week 15

Shared Journals

Class Journal Week 1
Class Journal Week 2
Class Journal Week 3
Class Journal Week 4
Class Journal Week 5
Class Journal Week 6
Class Journal Week 7
Class Journal Week 8
Class Journal Week 9
GÉNialOMICS Journal Week 10
GÉNialOMICS Journal Week 11
GÉNialOMICS Journal Week 12
GÉNialOMICS Journal Week 14
GÉNialOMICS Journal Week 15

Weekly Group Assignments	Shared Group Journals	Project Links	Team Members
Week 10 Week 11 Week 12 Week 14 Week 15	GÉNialOMICS Week 10 GÉNialOMICS Week 11 GÉNialOMICS Week 12 GÉNialOMICS Week 14 GÉNialOMICS Week 15	GENialOMICS Home Page GENialOMICS Deliverables Gene Database Project Overview Instructions for Project Deliverables Project Manager Guild Page GenMAPP User Guild Page Quality Assurance Guild Page Coder Guild Page	Project Manager/Coder: Anu Varshneya Quality Assurance: Brandon Litvak GenMAPP User: Veronica Pacheco GenMAPP User: Kevin Wyllie