Jwoodlee Week 15

Electronic Lab Notebook

Our GenMAPP users were reporting 416 missing genes from the .gdb which was a problem. Trixie found that 92 of these genes were in the XML file in such a way that led to the exporter missing them, the rest of the missing genes simply weren't in the XML file. Specifically, the genes were somewhere else in the file and weren't added to the OrderedLocusNames table by default. To capture these 92 elusive genes we consulted Dondi. Dondi edited the ShigellaflexneriUniProtSpeciesProfile class, which I had previously constructed, by

I navigated to the file gmbuilder.properties and edited the command that TallyEngine uses to count up the S.flexneri

BIOL 367, Fall 2015, User Page, Team Page

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