Vpachec3 Week 3

The Genetic Code, by Computer

  cat prokaryote.txt | see "y/atcg/tagc/"

Reading Frames

+1

cat prokaryote.txt | sed "s/..$//g" | sed "y/t/u/" | sed "s/.../& /g" | sed -f genetic-code.sed 

 S T I F Q - V R W P K K T I L N L K R C L I P C S A Y N P A A S S A G G I L

+2

cat prokaryote.txt | sed "s/^.//g" | sed "s/.$//g" | sed "y/t/u" | sed "s/.../& /g" | sed -f genetic-code.sed

L L Y F N R Y D G Q R R Q Y - T - N V A - Y H V P R I T Q  P P V P L A  A  F -

+3

cat prokaryote.txt | sed "s/^..//g" | sed "y/t/u/" | sed "s/.../& /g" | sed -f genetic-code.sed

Y Y I S I G T M A K E D N I E L E T L P N  T M F R V - P S R Q F R W R H F N

-1

cat prokaryote.txt | sed "y/tagc/aucg/" | rev | sed "s/.../& /g" | sed "s/..$//g" | sed -f genetic-code.sed

V K M P P A E L A A G L Y A E H G I R Q R F K F N I V F F G H R T Y - N I V

-2

 cat prokaryote.txt | sed "y/tagc/aucg" | rev | sed "s/^..//g" | sed "s/.../& /g" | sed -f genetic-code.sed

L K C R Q R N W R L G Y T  R N M V L G N V S S S I L S S L A I V P I E I - -

-3

cat prokaryote.txt | sed "y/tagc/aucg/" | rev | sed "s/^..//g" | sed "s/.../& /g" | sed -f genetic-code.sed

N A A S G T G G W V I R G T W Y - A T F Q V Q Y C L L W P S Y L L K Y S R

Links

Vpachec3 User Page