Week 4 E-notes Eyanosch
From LMU BioDB 2015
Revision as of 23:16, 24 September 2015 by Eyanosch (Talk | contribs) (added code and description of terminator sequence)
3 command sequences
- one for each question
so far for the first question
cat infA-E.coli-K12.txt. | grep "[ct]at[at]at" | grep "tt[gt]ac[at]" | sed "s/tttact/ <minus35box> & <\/minus35box> /g" | sed "s/cattat/ <minus 10box> & <\/minus10box> \n/" | sed "s/a/ <TSS>&<\/TSS>/" | sed "2s/gagg/ <RBS>&<\/RBS> /" | grep "aaaaggt.*gcctttt"
- the only problem that I'm having is only the second line shows when I add the grep "aaaaggt.*gcctttt" at the end to find the hairpin loop
| sed "s/aaaaggt.*tttttatt/ <Terminator>&<\/Terminator/g"
- adds the description of the terminator sequence
