Blitvak Week 4
From LMU BioDB 2015
Revision as of 21:40, 26 September 2015 by Blitvak (Talk | contribs) (first segment of the introductory portion of the Week 4 assignment)
Individual Journal Assignment Week 4
Finding the -35 and -10 boxes of the promoter
- I first found infA-E.coli-K12.txt by entering the correct directory,
cd ~dondi/xmlpipedb/data - I copied the sequence kept in that file on an external space for future reference/checking
- I assumed that the sequence is the mRNA-like strand and that it runs from 5'- 3'
- By reading the Week 4 Assignment Page, I found that the -10 box is generally
[ct]at[at]at, and that the -35 box is generallytt[gt]ac[at] - I skimmed over the More Text Processing Features page, and I found that
sed "s/Title/<h1>&<\/h1>/g"results in an output of <h1>Title</h1>; this command would be useful in tagging the sequence with its various parts
